View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0206_low_2 (Length: 383)
Name: NF0206_low_2
Description: NF0206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0206_low_2 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 887965 - 888312
Alignment:
| Q |
30 |
atatgtgaacctcaaaataattaaagattcaagttattaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887965 |
atatgtgaacctcaaaataattaaagattcaagttataaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaa |
888064 |
T |
|
| Q |
130 |
aaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888065 |
aaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacac |
888164 |
T |
|
| Q |
230 |
gcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaattt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
888165 |
gcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaattt |
888264 |
T |
|
| Q |
330 |
ctgttgatttttctttctaacagcaaattcaaaacaatcctatgctac |
377 |
Q |
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| T |
888265 |
ctgttgatttttctttctaacagcaaattcaaaacaatcccatgctac |
888312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 1003069 - 1002916
Alignment:
| Q |
83 |
taaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttga |
182 |
Q |
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| T |
1003069 |
taaagaaaagcgactaactacactaaatttaggaaatgattcattaaaaggaatcaagattcaaaatgatattcatatc----ataacaaaaccatttca |
1002974 |
T |
|
| Q |
183 |
tttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtga |
242 |
Q |
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| T |
1002973 |
tttaaaatgtgt--atcgattttgaatatcgaatcaagttacgactcacatatatcgtga |
1002916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 4433090 - 4433135
Alignment:
| Q |
30 |
atatgtgaacctcaaaataattaaagattcaagttattaatcaaat |
75 |
Q |
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| T |
4433090 |
atatatgaacctcaaaataattcaagattcaagtcataaatcaaat |
4433135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 16616 - 16497
Alignment:
| Q |
260 |
atgttacgactatcttaactaattttctct--gtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaat |
357 |
Q |
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|||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
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| T |
16616 |
atgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttctttctaacagcaaat |
16517 |
T |
|
| Q |
358 |
tcaaaacaatcctatgctac |
377 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
16516 |
tccaaacaatcctatgctac |
16497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 48301392 - 48301284
Alignment:
| Q |
269 |
ctatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatc |
368 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||| ||| | || ||||||||||||| || |||| || | |||||| |
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| T |
48301392 |
ctatcttaactaattttctctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttctttctagcaacaaactccatacaatc |
48301293 |
T |
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| Q |
369 |
ctatgctac |
377 |
Q |
| |
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||||||||| |
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| T |
48301292 |
ctatgctac |
48301284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 38192449 - 38192368
Alignment:
| Q |
296 |
tctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatcctatgctac |
377 |
Q |
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| T |
38192449 |
tctgattatagttatagctgatagactctattttatgctgatttttctttctaacagaaaattccaaataatcctatgctac |
38192368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 20019998 - 20019954
Alignment:
| Q |
333 |
ttgatttttctttctaacagcaaattcaaaacaatcctatgctac |
377 |
Q |
| |
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||||||||||| |||||||||||| || |||||| |||||||||| |
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| T |
20019998 |
ttgatttttctctctaacagcaaactccaaacaaccctatgctac |
20019954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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