View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0207_high_2 (Length: 474)
Name: NF0207_high_2
Description: NF0207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0207_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 5 - 474
Target Start/End: Complemental strand, 19755789 - 19755320
Alignment:
| Q |
5 |
tgtttatgagattcgaattgagaaggagaagaaaagaaaacatgctcaagaaaaacccaaagattcaagtgagcacaattccgtcaatcattctcaagaa |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
19755789 |
tgtttctgagattcgaattgagaaggagaagaaaagaaaacatgctcaaaaaaaacccaaagattctagtgagcaaaattccgtcaatcattctcaagaa |
19755690 |
T |
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| Q |
105 |
aatccagataatggtaacaatgtaattgatggagaagcagctgtgaagggccccataaagaaaaatcgagggcgtaaagaaggcaaacctgctagtgcac |
204 |
Q |
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|||| |||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |
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| T |
19755689 |
aatctagataatggtaacaatgtaactgatggaaaagctgttgtgaagggccccataaagaaaaatcgagggcgtaaacaaggcaaacctagtagtacac |
19755590 |
T |
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| Q |
205 |
attcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcgacttttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755589 |
attcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcgacttttt |
19755490 |
T |
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| Q |
305 |
tatgtgtttaagggtgctaaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattgaccccatctttgaggaca |
404 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19755489 |
aatgtgtttcagggtgctgaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattaaccccatctttgaggaca |
19755390 |
T |
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| Q |
405 |
atatgatagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgctctctgctcctcctca |
474 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
19755389 |
atatgataattgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctca |
19755320 |
T |
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