View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0207_high_8 (Length: 251)
Name: NF0207_high_8
Description: NF0207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0207_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3529217 - 3529458
Alignment:
| Q |
1 |
tcaatgttcatataaatcggtcacatagttgcaccaatggctctgagcaggtcacctcgaaccataagatttggtacctcttttgg-nnnnnnntccaca |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3529217 |
tcaatgttcatataaatcggtcacatagttgcaccaatggctctgagcaggtcacctcgaaccataagatttggtacctcttttggaaaaaaaatccaca |
3529316 |
T |
|
| Q |
100 |
cacgtcaaagattaatttacaagtctatagatcttaaataagcacttcataaagataaagatagtaatagaacacattattgcaaatgagatcacacgat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3529317 |
cacgtcaaagattaatttacaagtctatagatcttaaataagcacttc------ataaaaatagtaatagaacacattattgcaaatgagatcacacgat |
3529410 |
T |
|
| Q |
200 |
tgtaatcaaata--cgagagttacaaagaacgataatattcatctcac |
245 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
3529411 |
tgtaatcaaatatgagagagttacaaagaacgataatattcatttcac |
3529458 |
T |
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