View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0207_low_1 (Length: 539)
Name: NF0207_low_1
Description: NF0207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0207_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 168 - 530
Target Start/End: Complemental strand, 19292189 - 19291824
Alignment:
| Q |
168 |
atatttatatttaagtctctttcgcacaagtttcgttttttctttgttaatatagatttttacacttcaaatcaaacgactgtgaaaaactgcaacttat |
267 |
Q |
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| T |
19292189 |
atatatatatttaagtctctttcgcacaagtttcgttttttctttgttaatatagattttgacacttcaaatcaaacgactgtgaaaaactgcaacttat |
19292090 |
T |
|
| Q |
268 |
atgtaatatatttgatttgattgtcattatttcaattgtgaaaaacagaataaagctacattttagatgtattgtttacatccattaattcaacactttt |
367 |
Q |
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| T |
19292089 |
atgtaatatatttgatttgattgtcattatttcaattgtgaaaaacacaataaagctacattttagatgtattgtttacatccattaattcaacactttt |
19291990 |
T |
|
| Q |
368 |
ccaaggcatacaatcatcgaatgctcctgttccatc---atccctacacccaccacctttattcattctccatgtgcaatttttgcatttatctcgtttg |
464 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19291989 |
ccaaggcatacaatcatcaaatgctcctgttccatcagaatccctacacccaccacctttattcattctccatgtgcaatttttgcatttatctcgtttg |
19291890 |
T |
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| Q |
465 |
aagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
530 |
Q |
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| T |
19291889 |
aagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
19291824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 66 - 530
Target Start/End: Complemental strand, 19298258 - 19297781
Alignment:
| Q |
66 |
tataggtgaatgaacgaagaaggggatcaaaacaaagattatgtctgtcgtgcctttttaactggactttgatcttgacggtgtattttgatctaacagc |
165 |
Q |
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| T |
19298258 |
tataggtgaatgaacgaagaaggggatcaaaacaaagatcatgtgtgtcatgcatttttaactggactttgatcttgaccgtgtattttgatctaacagt |
19298159 |
T |
|
| Q |
166 |
tgatatt------------tatatttaagtctctttcgcacaagtttcgttttttctttgttaatatagatttttacacttcaaatcaaacgactgtgaa |
253 |
Q |
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||||||| ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||||| | ||| ||| |||||| |
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| T |
19298158 |
tgatattattaggaaaatatatatttaagtctctc-cgcacaagttttgttttttctttattcatatagattttgacacttgacatcgaac---tgtgaa |
19298063 |
T |
|
| Q |
254 |
aaactgcaacttatatgtaatatatttgatttgattgtcattatttcaattgtgaaaaacagaataaagctacattttagatgta---ttgtttacatcc |
350 |
Q |
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| T |
19298062 |
aaactgcaacttatatgtaatat-tttgatttctttatcattatttcaattgtgaaaaacgcaagaaagctacatttcagatgtagtattgtttacatcc |
19297964 |
T |
|
| Q |
351 |
attaattcaacacttttccaaggcatacaatcatcgaatgctcctgttccatcat---ccctacacccaccacctttattcattctccatgtgcaatttt |
447 |
Q |
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||||||||||||||||||||||| |||||| ||||||| | |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
19297963 |
attaattcaacacttttccaaggtatacaaacatcgaacgatcctgttccatcatgatccctacacccaccatctttattcattctccacctgcaatttt |
19297864 |
T |
|
| Q |
448 |
tgcatttatctcgtttgaagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
530 |
Q |
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| T |
19297863 |
tgcatctatctcgtttgaaatcataaatgtcaatataatgacggttggggctttctttccatgtaaaactgcagaagaataat |
19297781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 19292327 - 19292221
Alignment:
| Q |
66 |
tataggtgaatgaacgaagaaggggatcaaaacaaagattatgtctgtcgtgcctttttaactggactttgatcttgacggtgtattttgatctaacagc |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19292327 |
tataggtgaatgaacgaagaaggggatcaaaacaaagatcatgtgtgtcgtgcctttttaactggactttgatcttgacggtgtattttgatctaacaac |
19292228 |
T |
|
| Q |
166 |
tgatatt |
172 |
Q |
| |
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||||||| |
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| T |
19292227 |
tgatatt |
19292221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 7846975 - 7846929
Alignment:
| Q |
327 |
attttagatgtattgtttacatccattaattcaacacttttccaagg |
373 |
Q |
| |
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| T |
7846975 |
attttggatgtactgtttgcatccattatttcaacacttttccaagg |
7846929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 529
Target Start/End: Original strand, 11041150 - 11041208
Alignment:
| Q |
471 |
taaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataa |
529 |
Q |
| |
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| T |
11041150 |
taaatttcaatataatgacgatatggacttccttgccatgtaaaactgcagaagaataa |
11041208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 530
Target Start/End: Original strand, 9145835 - 9145931
Alignment:
| Q |
434 |
ccatgtgcaatttttgcatttatctcgtttgaagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
530 |
Q |
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|||||||||||||| ||| || || ||||| |||| |||||||||| ||||||||| | |||| |||| ||||||||||| ||||||||||||| |
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| T |
9145835 |
ccatgtgcaattttcgcaattgtcgtgtttgtagtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9145931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 530
Target Start/End: Complemental strand, 9180597 - 9180501
Alignment:
| Q |
434 |
ccatgtgcaatttttgcatttatctcgtttgaagtcataaatgtcaatataatgacgttgggggctttctttccatgtaaaactgcagaagaataat |
530 |
Q |
| |
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|||||||||||||| ||| || || ||||| |||| |||||||||| ||||||||| | |||| |||| ||||||||||| ||||||||||||| |
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| T |
9180597 |
ccatgtgcaattttcgcaattgtcgtgtttgtagtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9180501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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