View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0207_low_10 (Length: 257)

Name: NF0207_low_10
Description: NF0207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0207_low_10
NF0207_low_10
[»] chr1 (4 HSPs)
chr1 (30-257)||(7298572-7298807)
chr1 (30-194)||(47124620-47124787)
chr1 (152-185)||(6815264-6815297)
chr1 (152-185)||(28700026-28700059)
[»] chr4 (8 HSPs)
chr4 (30-194)||(11882905-11883067)
chr4 (30-194)||(33018546-33018715)
chr4 (30-194)||(33432739-33432901)
chr4 (30-122)||(35347181-35347273)
chr4 (146-195)||(35347298-35347347)
chr4 (152-188)||(23668224-23668260)
chr4 (153-189)||(52106253-52106289)
chr4 (143-194)||(23669246-23669297)
[»] chr8 (6 HSPs)
chr8 (30-128)||(34053192-34053290)
chr8 (143-193)||(34053125-34053175)
chr8 (143-194)||(9370102-9370153)
chr8 (152-185)||(9369095-9369128)
chr8 (152-185)||(9404158-9404191)
chr8 (152-185)||(9406319-9406352)
[»] chr3 (4 HSPs)
chr3 (30-191)||(12008925-12009094)
chr3 (30-129)||(47669149-47669248)
chr3 (30-121)||(51985886-51985977)
chr3 (143-194)||(51985799-51985850)
[»] chr7 (5 HSPs)
chr7 (30-117)||(26761474-26761561)
chr7 (161-194)||(26761390-26761423)
chr7 (143-195)||(47817419-47817471)
chr7 (153-189)||(41806607-41806643)
chr7 (152-188)||(47818448-47818484)
[»] chr5 (1 HSPs)
chr5 (30-194)||(43070089-43070260)
[»] chr6 (1 HSPs)
chr6 (30-192)||(6535185-6535350)
[»] chr2 (1 HSPs)
chr2 (152-185)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 7298572 - 7298807
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    ||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  7298572 atgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcataacgtc 7298671  T
Q  130 nnnnnnnnnnnnn--------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcctagtttcgatagtaaacttcaagtttg 221  Q
                         ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7298672 aaaaaaaaaaaacaaaaaaaagaggtcatgcacggtaggagacctatataggtctcctaccctaaacgccgcctagtttcgatagtaaacttcaagtttg 7298771  T
Q  222 aatcaaattttaaaatgaaaatcaattcttattgaa 257  Q
    |||||||||||||||| |||||||||||||||||||    
T  7298772 aatcaaattttaaaatcaaaatcaattcttattgaa 7298807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 47124787 - 47124620
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||    
T  47124787 atgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttgatctatggtgtgttcaaccaatctaacggttaggaaaggtctgaagatc 47124688  T
Q  130 ---nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
                    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  47124687 aaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaaggtctcccaccctaaacgccgcc 47124620  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 11882905 - 11883067
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  11882905 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgttcaaccaatctaacggttaggaaaagtccgaaggtc 11883004  T
Q  130 nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11883005 --aaaaaaaaaaagaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 11883067  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 33018546 - 33018715
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| ||||||||||||| || | ||| |||  ||||||    
T  33018546 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgttcaaccaatctaacgattggaaaaggtccaaaggtc 33018645  T
Q  130 -----nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018646 aaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 33018715  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 33432901 - 33432739
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||||||||||| ||||||||||||  ||||||||  || |||| ||    
T  33432901 atgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatctatggtgtgttcaaccaatctaactattaggaaagatccgaagttc 33432802  T
Q  130 nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
                  | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33432801 aaaaaaaaaaaa--atgtcatgcacggtaggagatctataaaggtctcccaccctaaacgccgcc 33432739  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 35347181 - 35347273
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtca 122  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||| ||| |||||||||| ||| ||||    
T  35347181 atgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatgatgtgtttaactaatttaacggttagaaaaagtca 35347273  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 35347298 - 35347347
Alignment:
Q  146 gtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 195  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347298 gtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  152 cacggtaggagacctataaaggtctcccaccctaaac 188  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  153 acggtaggagacctataaaggtctcccaccctaaacg 189  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  143 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 34053290 - 34053192
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 128  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34053290 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 34053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  143 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 193  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  143 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 12009094 - 12008925
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  12009094 atgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggttagaaaatgtcagaagatc 12008995  T
Q  130 --------nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgcc 191  Q
                         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12008994 aaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgcc 12008925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 47669149 - 47669248
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  47669149 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctctggtgtgtttaaccaatctaacggttaggaaatgtgagaaggtc 47669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 51985977 - 51985886
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtc 121  Q
    ||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51985977 atgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttgatctatggtatgtttaaccaatctaacggttaggaaatgtc 51985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  143 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 26761561 - 26761474
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaa 117  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26761561 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaa 26761474  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 26761423 - 26761390
Alignment:
Q  161 agacctataaaggtctcccaccctaaacgccgcc 194  Q
    ||||||||||||||||||||||||||||||||||    
T  26761423 agacctataaaggtctcccaccctaaacgccgcc 26761390  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  143 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 195  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  153 acggtaggagacctataaaggtctcccaccctaaacg 189  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  152 cacggtaggagacctataaaggtctcccaccctaaac 188  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 43070089 - 43070260
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||     
T  43070089 atgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatctaacggttaggaaaggtccgaaggtt 43070188  T
Q  130 nnnnnnnnnnnnn-------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 194  Q
                        ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070189 aaaaaaaaaaaaaaaaaaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 6535185 - 6535350
Alignment:
Q  30 atgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 129  Q
    |||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||||||||| || |||||||||| |||||||| ||| |||||||    
T  6535185 atgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctgtggtgtgttcaatcaatctaacgattaggaaaggtccgaaggtc 6535284  T
Q  130 ---nnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 192  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535285 aaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  152 cacggtaggagacctataaaggtctcccacccta 185  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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