View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0207_low_11 (Length: 255)

Name: NF0207_low_11
Description: NF0207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0207_low_11
NF0207_low_11
[»] chr8 (23 HSPs)
chr8 (1-227)||(2364320-2364550)
chr8 (92-153)||(24326106-24326167)
chr8 (106-162)||(37353097-37353153)
chr8 (93-156)||(2487939-2488002)
chr8 (2-61)||(4055613-4055672)
chr8 (98-145)||(8535997-8536044)
chr8 (105-152)||(25881350-25881397)
chr8 (95-156)||(11376781-11376842)
chr8 (106-158)||(4560591-4560643)
chr8 (111-158)||(3634613-3634660)
chr8 (2-73)||(8062343-8062414)
chr8 (92-155)||(26499791-26499854)
chr8 (93-156)||(34849180-34849243)
chr8 (111-153)||(21130706-21130748)
chr8 (93-158)||(778465-778530)
chr8 (93-158)||(43368629-43368694)
chr8 (98-158)||(1664450-1664510)
chr8 (92-156)||(30251385-30251448)
chr8 (110-158)||(38602421-38602468)
chr8 (92-156)||(38648427-38648490)
chr8 (95-163)||(39881645-39881713)
chr8 (106-158)||(43385729-43385781)
chr8 (92-156)||(43717865-43717928)
[»] chr4 (26 HSPs)
chr4 (93-154)||(18628486-18628547)
chr4 (93-158)||(33534098-33534163)
chr4 (106-158)||(1017117-1017169)
chr4 (2-50)||(11158365-11158413)
chr4 (105-156)||(21157856-21157907)
chr4 (108-155)||(50298606-50298653)
chr4 (93-154)||(8328052-8328113)
chr4 (92-144)||(22471349-22471401)
chr4 (111-155)||(22523774-22523818)
chr4 (2-70)||(23819103-23819171)
chr4 (106-158)||(27043759-27043810)
chr4 (2-61)||(11264315-11264374)
chr4 (95-158)||(15173232-15173294)
chr4 (93-156)||(25717669-25717732)
chr4 (95-145)||(25497634-25497684)
chr4 (92-158)||(25904152-25904217)
chr4 (113-155)||(47970392-47970434)
chr4 (93-158)||(6428094-6428159)
chr4 (116-157)||(18512445-18512486)
chr4 (106-162)||(19429798-19429854)
chr4 (116-156)||(22845637-22845676)
chr4 (13-73)||(24929518-24929578)
chr4 (93-157)||(27123282-27123346)
chr4 (2-74)||(30066750-30066822)
chr4 (1-61)||(32769629-32769689)
chr4 (98-158)||(35743350-35743410)
[»] chr2 (39 HSPs)
chr2 (92-165)||(26548528-26548601)
chr2 (92-156)||(42852633-42852697)
chr2 (105-159)||(14277821-14277875)
chr2 (93-158)||(22878174-22878239)
chr2 (92-156)||(40943988-40944052)
chr2 (93-156)||(25609872-25609935)
chr2 (2-73)||(43065435-43065506)
chr2 (92-154)||(17443541-17443603)
chr2 (2-68)||(35993370-35993436)
chr2 (92-157)||(5759505-5759570)
chr2 (4-61)||(5781685-5781742)
chr2 (1-73)||(1647249-1647321)
chr2 (111-155)||(15200265-15200309)
chr2 (110-158)||(15370252-15370300)
chr2 (95-155)||(29430836-29430896)
chr2 (92-156)||(40158793-40158857)
chr2 (2-73)||(680517-680588)
chr2 (110-165)||(5752427-5752482)
chr2 (105-156)||(7035341-7035392)
chr2 (95-158)||(30331830-30331892)
chr2 (2-73)||(33192216-33192287)
chr2 (2-61)||(34652033-34652092)
chr2 (31-73)||(787375-787417)
chr2 (31-73)||(1494431-1494473)
chr2 (31-73)||(5902534-5902576)
chr2 (100-158)||(9996821-9996879)
chr2 (92-162)||(10567132-10567202)
chr2 (92-158)||(42419869-42419934)
chr2 (93-158)||(9478375-9478440)
chr2 (92-133)||(32837398-32837439)
chr2 (110-155)||(38787833-38787878)
chr2 (2-71)||(44438826-44438895)
chr2 (93-158)||(44458085-44458150)
chr2 (93-153)||(1318312-1318371)
chr2 (118-158)||(26372656-26372696)
chr2 (92-156)||(33192277-33192340)
chr2 (110-162)||(37276837-37276889)
chr2 (116-156)||(40759259-40759299)
chr2 (93-137)||(44606060-44606104)
[»] chr3 (29 HSPs)
chr3 (92-156)||(22667478-22667542)
chr3 (92-156)||(22724117-22724181)
chr3 (95-157)||(21872225-21872287)
chr3 (93-155)||(26330255-26330317)
chr3 (92-155)||(18405763-18405825)
chr3 (93-156)||(24158447-24158510)
chr3 (31-73)||(24624253-24624295)
chr3 (92-172)||(20194947-20195028)
chr3 (111-170)||(1395733-1395793)
chr3 (106-158)||(2923567-2923619)
chr3 (93-165)||(20267599-20267671)
chr3 (92-156)||(24624285-24624349)
chr3 (99-155)||(25129960-25130016)
chr3 (2-70)||(50952347-50952415)
chr3 (2-72)||(6483815-6483885)
chr3 (105-155)||(30657374-30657424)
chr3 (107-184)||(37795686-37795763)
chr3 (109-155)||(41033188-41033234)
chr3 (105-158)||(26542625-26542677)
chr3 (95-156)||(28283530-28283591)
chr3 (2-79)||(30923877-30923954)
chr3 (111-155)||(20210860-20210904)
chr3 (106-158)||(25447174-25447225)
chr3 (112-156)||(27795944-27795988)
chr3 (111-155)||(41724306-41724350)
chr3 (98-158)||(45590732-45590792)
chr3 (111-155)||(49605783-49605827)
chr3 (93-157)||(50211811-50211875)
chr3 (94-158)||(51130827-51130891)
[»] chr7 (22 HSPs)
chr7 (93-158)||(4970721-4970785)
chr7 (110-155)||(8427106-8427151)
chr7 (93-158)||(34950080-34950145)
chr7 (92-156)||(33894702-33894766)
chr7 (98-157)||(24048621-24048680)
chr7 (92-158)||(31002810-31002876)
chr7 (96-165)||(2825158-2825227)
chr7 (97-158)||(14823798-14823859)
chr7 (97-158)||(15270805-15270866)
chr7 (93-158)||(44151405-44151470)
chr7 (1-61)||(39539778-39539838)
chr7 (2-73)||(9423579-9423650)
chr7 (94-157)||(28727693-28727756)
chr7 (95-158)||(34035996-34036058)
chr7 (31-73)||(12834947-12834989)
chr7 (92-158)||(19302492-19302557)
chr7 (95-156)||(3836614-3836675)
chr7 (8-73)||(25670571-25670636)
chr7 (112-157)||(25907567-25907612)
chr7 (92-156)||(8094381-8094445)
chr7 (112-156)||(29363603-29363647)
chr7 (113-165)||(47007069-47007121)
[»] chr1 (32 HSPs)
chr1 (110-162)||(33204319-33204370)
chr1 (92-156)||(41638239-41638303)
chr1 (105-156)||(15581342-15581393)
chr1 (106-156)||(21002244-21002294)
chr1 (92-154)||(32515374-32515436)
chr1 (112-165)||(28837275-28837328)
chr1 (93-158)||(46504147-46504212)
chr1 (92-156)||(2295172-2295235)
chr1 (110-158)||(6292585-6292633)
chr1 (98-157)||(4276580-4276639)
chr1 (93-156)||(18327077-18327140)
chr1 (111-158)||(24460330-24460377)
chr1 (1-68)||(27140491-27140558)
chr1 (1-68)||(28689442-28689509)
chr1 (93-156)||(31517671-31517734)
chr1 (93-178)||(4757414-4757500)
chr1 (2-72)||(10199394-10199464)
chr1 (116-158)||(29793627-29793669)
chr1 (93-155)||(36070257-36070319)
chr1 (105-158)||(3597210-3597263)
chr1 (110-159)||(11217942-11217991)
chr1 (105-158)||(12564428-12564481)
chr1 (93-158)||(17009511-17009576)
chr1 (93-158)||(50644184-50644248)
chr1 (106-158)||(4622182-4622234)
chr1 (110-158)||(10199337-10199385)
chr1 (13-73)||(11639401-11639461)
chr1 (110-162)||(15784411-15784462)
chr1 (98-158)||(15819202-15819262)
chr1 (106-150)||(28836982-28837026)
chr1 (5-61)||(35080066-35080122)
chr1 (92-156)||(38001671-38001734)
[»] chr5 (26 HSPs)
chr5 (111-158)||(37968971-37969018)
chr5 (95-153)||(14714777-14714835)
chr5 (92-158)||(38033956-38034022)
chr5 (105-150)||(13781812-13781857)
chr5 (97-158)||(17498791-17498852)
chr5 (93-156)||(10391418-10391481)
chr5 (92-158)||(499660-499726)
chr5 (112-158)||(10791089-10791135)
chr5 (93-127)||(10907454-10907488)
chr5 (108-158)||(36796636-36796686)
chr5 (93-155)||(37611147-37611209)
chr5 (93-155)||(37787877-37787939)
chr5 (2-68)||(40205064-40205130)
chr5 (93-170)||(2103179-2103256)
chr5 (111-156)||(10771819-10771864)
chr5 (93-158)||(11457174-11457239)
chr5 (93-158)||(12459930-12459995)
chr5 (95-156)||(15015922-15015982)
chr5 (92-156)||(2568733-2568797)
chr5 (113-157)||(6749429-6749473)
chr5 (111-155)||(7550450-7550494)
chr5 (110-158)||(12425667-12425714)
chr5 (92-156)||(16937814-16937877)
chr5 (15-63)||(19138712-19138760)
chr5 (5-61)||(28586763-28586819)
chr5 (2-42)||(38104873-38104913)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-68)||(159963-160029)
[»] chr6 (26 HSPs)
chr6 (2-68)||(34939758-34939824)
chr6 (92-149)||(2732185-2732242)
chr6 (100-149)||(32976061-32976110)
chr6 (2-67)||(33067172-33067237)
chr6 (92-153)||(33385604-33385665)
chr6 (93-153)||(2455689-2455749)
chr6 (93-157)||(26559169-26559233)
chr6 (1-69)||(34538207-34538275)
chr6 (98-153)||(27894114-27894169)
chr6 (26-73)||(34544129-34544176)
chr6 (7-73)||(1669783-1669849)
chr6 (3-61)||(4420658-4420716)
chr6 (112-158)||(7351600-7351646)
chr6 (93-155)||(27857434-27857496)
chr6 (92-158)||(29249468-29249534)
chr6 (116-158)||(33089605-33089647)
chr6 (110-156)||(35070398-35070444)
chr6 (105-158)||(281777-281830)
chr6 (93-158)||(2455886-2455951)
chr6 (105-158)||(3180998-3181051)
chr6 (95-156)||(5551528-5551589)
chr6 (96-145)||(10031811-10031860)
chr6 (93-167)||(30533865-30533941)
chr6 (95-156)||(31774455-31774516)
chr6 (93-157)||(2460081-2460145)
chr6 (95-155)||(31461750-31461810)
[»] scaffold0159 (1 HSPs)
scaffold0159 (4-61)||(27017-27074)
[»] scaffold0590 (1 HSPs)
scaffold0590 (92-174)||(989-1072)
[»] scaffold0275 (1 HSPs)
scaffold0275 (92-174)||(2903-2986)
[»] scaffold0141 (1 HSPs)
scaffold0141 (105-155)||(9710-9760)
[»] scaffold0147 (1 HSPs)
scaffold0147 (4-61)||(12701-12758)
[»] scaffold0024 (1 HSPs)
scaffold0024 (99-152)||(27658-27711)
[»] scaffold0508 (1 HSPs)
scaffold0508 (45-73)||(9784-9812)
[»] scaffold0428 (1 HSPs)
scaffold0428 (94-154)||(3983-4043)
[»] scaffold0199 (1 HSPs)
scaffold0199 (98-158)||(6891-6951)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2364550 - 2364320
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcatatctctcnnnnnnnnnnnn----ctgtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||    
T  2364550 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcatatctctcaaaaaaaaaaaaaaaactgtt 2364451  T
Q  97 ttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaatagactctatattaccaatccatccaaatta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364450 ttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtcgatcaaatagactctatattaccaatccatccaaatta 2364351  T
Q  197 tcaactttaagacataaaggaaccatttact 227  Q
    |||||||||||||||||||||||||||||||    
T  2364350 tcaactttaagacataaaggaaccatttact 2364320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 24326106 - 24326167
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    |||||| ||||| |||| |||||||||||||||||| |||||| ||| ||||||||||||||    
T  24326106 ctgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 37353153 - 37353097
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    |||||||||||||||||||||| |||||||||| ||||| | ||| |||||||||||    
T  37353153 tcttccaaacagtctcacaagtgcttatgtcagtagataggttcagataagtcgatc 37353097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 2488002 - 2487939
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||  ||| |||||||||||||||||| |||||||||| |||| | ||||||||||    
T  2488002 tgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataag 2487939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 4055672 - 4055613
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||||||| |||||||||   |||| |||||||||||| ||||||||||||||||||    
T  4055672 ataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtcataa 4055613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 8536044 - 8535997
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataa 145  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  8536044 tcataaactctcccaaacagtctcacaagtacttatgtcagtagataa 8535997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 25881397 - 25881350
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaa 152  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  25881397 ctctttcaaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 11376781 - 11376842
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||  ||| ||||| ||||||||||| |||||| |||| |||||||||||||||||    
T  11376781 ttttcataagttctcccaaatagtctcacaagaacttatatcagtagataagctcaaataag 11376842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 4560591 - 4560643
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||  ||||||||| |||||||||  |||||||||||||||||||    
T  4560591 tcttccaaacaacctcacaagtgcttatgtcaatagataagctcaaataagtc 4560643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 3634660 - 3634613
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||| |||||| | |||||||| |||||||||||||||||||    
T  3634660 caaacagtcttacaagtgcatatgtcagcagataagctcaaataagtc 3634613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 8062343 - 8062414
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||||||||||| || | |||| ||||||||||||  ||||||||| ||  |||||||||| ||||    
T  8062343 ataagctatcttagagagattatggaaataagctgaaaacatcttatggacacgttgtaaactgtttccata 8062414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 26499791 - 26499854
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||| |||| | ||| |||||||||||| |||||||||| ||||||  ||||||||    
T  26499791 ctgttttcataacctctacaaaatagtctcacaagtgcttatgtcagtagataaattcaaataa 26499854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 34849180 - 34849243
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||| |  ||| ||||||||||||| ||||||||||| ||| || ||||||||||||||    
T  34849180 tgttttcattagttctcccaaacagtctcaaaagtacttatgccagtagctaagctcaaataag 34849243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 21130706 - 21130748
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    |||||||||||||||||| ||||||||| | ||||||||||||    
T  21130706 caaacagtctcacaagtatttatgtcagcacataagctcaaat 21130748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 778465 - 778530
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||  |||| ||||||||||||||||| ||||| |||| | |||||  ||||||||||    
T  778465 tgttttcataagttcttgcaaacagtctcacaagtgcttatttcagtaaataagtacaaataagtc 778530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 43368694 - 43368629
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| || || ||| ||||||||||| | ||||||| || ||||||| |||||||||||    
T  43368694 tgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataagtc 43368629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 1664450 - 1664510
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||| ||||||||||||||||||  |||||  || |||||| ||||||||||||    
T  1664450 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtc 1664510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 30251448 - 30251385
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||| |||  ||| |||||||||||||| |  ||||||||||| |||||||||||||||||    
T  30251448 ctgttttcgtaagttctcccaaacagtctcacgaa-acttatgtcagtagataagctcaaataag 30251385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 38602421 - 38602468
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||| |||||||  ||||||||||| |||||||||||||||||||    
T  38602421 ccaaacagcctcacaaa-acttatgtcagtagataagctcaaataagtc 38602468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 38648427 - 38648490
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||| ||||||||||||||||  ||||||||||| |||||| || |||||||    
T  38648427 ctgttttcataaggtctcccaaacagtctcacaa-aacttatgtcagtagataatcttaaataag 38648490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 39881713 - 39881645
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatca 163  Q
    |||||| || |||||||||||| ||||||||||  ||||| ||  ||||||| ||||||||||| ||||    
T  39881713 ttttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataagtcaatca 39881645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 43385729 - 43385781
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||||| || |||||| ||| ||||||||| | |||||||    
T  43385729 tcttccaaacagtctcacaggtgcttatgccagtagataagcttagataagtc 43385781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 43717928 - 43717865
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||| ||||| ||||||||||  ||||||||||  |||||||||||||||||    
T  43717928 ctgttttcataagttctcccaaatagtctcacaaa-acttatgtcaatagataagctcaaataag 43717865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 18628547 - 18628486
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaata 154  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||| |||||||||||||||    
T  18628547 tgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 33534163 - 33534098
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| ||||  |||| | ||||||||||||||||||||  |||||||||||||||||||    
T  33534163 tgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataagtc 33534098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 1017117 - 1017169
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||||||||  ||||||||| |||| ||||||||||||||    
T  1017117 tcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagtc 1017169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 11158413 - 11158365
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatgg 50  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  11158413 ataagctatcttagagagcttgtggaaataagctgaaaacagtttatgg 11158365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 21157856 - 21157907
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||||||| |||||| |||||||||| |||| ||||||||||||    
T  21157856 ctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 50298606 - 50298653
Alignment:
Q  108 ttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  50298606 ttccaaacagtctcacaagtgcttatgtcagtagataagctaaaataa 50298653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 8328113 - 8328052
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaata 154  Q
    ||||||||||| || ||||||||||||||| |||| |||||| ||  |||||||||||||||    
T  8328113 tgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 22471349 - 22471401
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagata 144  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||| |||||    
T  22471349 ctgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagata 22471401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 22523774 - 22523818
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||    
T  22523774 caaacagtctcacaagtacttatgtcagtagataaactcgaataa 22523818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 23819103 - 23819171
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttc 70  Q
    ||||||||||||  ||||||| | |||| ||| ||||||||  ||||||||||||||||| ||||||||    
T  23819103 ataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttc 23819171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 27043810 - 27043759
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||| ||||||  ||||||||||| |||||||||||||||||||    
T  27043810 tcttccaaacagtttcacaaa-acttatgtcagtagataagctcaaataagtc 27043759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 11264315 - 11264374
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    |||||| ||| |||||||||| | |||| ||| |||||||| ||||||||||||||||||    
T  11264315 ataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataa 11264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 15173294 - 15173232
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||  ||| ||||||||||||||||  ||||||||||| ||||||| |||||||||||    
T  15173294 ttttcataaagtctcccaaacagtctcacaaa-acttatgtcagtagataagttcaaataagtc 15173232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 25717669 - 25717732
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||| ||||| |||||||||||| | |||||||| |||||||| | | |||||||||||||||    
T  25717669 tgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaataag 25717732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 25497634 - 25497684
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataa 145  Q
    ||||||||| || | |||||| |||||||||||||||||||||| ||||||    
T  25497634 ttttcataagctttaccaaactgtctcacaagtacttatgtcagtagataa 25497684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 25904217 - 25904152
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||| |||| ||||||||||||||||  | ||||||||   ||||||||||||||||||    
T  25904217 ctgttttcataagctctcccaaacagtctcacaa-aatttatgtcattggataagctcaaataagtc 25904152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 47970392 - 47970434
Alignment:
Q  113 aacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||| |||||||| |||||||||| ||||||||||||||||    
T  47970392 aacagtttcacaagtgcttatgtcagtagataagctcaaataa 47970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 6428094 - 6428159
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||  ||||| ||||||||||| |||||  ||  | |||||||||||||||||    
T  6428094 tgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtc 6428159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 18512486 - 18512445
Alignment:
Q  116 agtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    ||||||||||||  ||||||||| ||||||||||||||||||    
T  18512486 agtctcacaagtgtttatgtcagtagataagctcaaataagt 18512445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 19429798 - 19429854
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    ||||||||||| ||||||| || ||||||  || ||||||| |||||||||||||||    
T  19429798 tcttccaaacaatctcacatgtgcttatgcgagtagataagttcaaataagtcgatc 19429854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 22845676 - 22845637
Alignment:
Q  116 agtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  22845676 agtctcacaagtacttatgt-agtagataagctcaaataag 22845637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 24929518 - 24929578
Alignment:
Q  13 tagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||| | |||| |||||||||||| |||||| ||||| ||||| |||||| ||||    
T  24929518 tagagagcttatggaaataagctgaaaacaatttatgaacatgccataagctgtttccata 24929578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 27123346 - 27123282
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||  ||   ||||||||||||||||    
T  27123346 tgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagt 27123282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 30066822 - 30066750
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcatat 74  Q
    |||||||||||| |||||||| |  ||| ||||||||||||  ||||| |||| | |||| ||||||||||||    
T  30066822 ataagctatcttggagagcttataaaaacaagctgaaaacagattatgaacatattataagctgttttcatat 30066750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32769689 - 32769629
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    |||||||||||   ||||||||| ||||| ||| |||||||| ||||||||||||| ||||    
T  32769689 tataagctatcccggagagcttgacgaaataaggtgaaaacagtttatggacatgttataa 32769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 35743350 - 35743410
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||||| |||||||||||||| | ||||| | || |||||| ||||||||||||    
T  35743350 tcataagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaataagtc 35743410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 26548528 - 26548601
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    |||||||||||| | |||||||| |||||||||| |||||||||| | ||||||||||||||||| | ||||||    
T  26548528 ctgttttcataagcccttccaaatagtctcacaaatacttatgtcggtagataagctcaaataagccaatcaaa 26548601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 42852697 - 42852633
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||  ||||||||||||||||||||||| |||||| ||| ||||||| |||||||||    
T  42852697 ctgttttcataggctcttccaaacagtctcacaagtgcttatgccagcagataagttcaaataag 42852633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 14277875 - 14277821
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcg 159  Q
    |||||||||||| ||||||||||||||||||| | |||||| |||||||||||||    
T  14277875 ctcttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcg 14277821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 22878174 - 22878239
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| |||||  ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  22878174 tgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtc 22878239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 40943988 - 40944052
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||| || ||||||||||| |||||||| |||||||||  |||||| ||||||||||    
T  40943988 ctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 40944052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 25609872 - 25609935
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||| ||||| || |||||| ||||||||||||| ||||||| || |||||||||||||||||    
T  25609872 tgtttccataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataag 25609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 43065506 - 43065435
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||| |||| | |||||||| | |||| |||||||||||| ||||||||||||||||||  ||||||||||    
T  43065506 ataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcata 43065435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 17443603 - 17443541
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaata 154  Q
    |||||| ||||| ||||||||||||||||||||||| ||||| |||| | ||||| |||||||    
T  17443603 ctgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaata 17443541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 35993436 - 35993370
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    |||||||||| |||||| ||| |  ||| |||||||||||| |||||||||| ||||||||||||||    
T  35993436 ataagctatcatagagaacttatgaaaataagctgaaaacaatttatggacacgtcataaactgttt 35993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 5759570 - 5759505
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||| ||||| |||| ||||||||||||||||||||||||  ||  |||||| |||||||||||    
T  5759570 ctgtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataagt 5759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 5781685 - 5781742
Alignment:
Q  4 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    |||||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||    
T  5781685 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataa 5781742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 1647249 - 1647321
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||||||||  |||||||||| | |||| ||||||||||||  |||||  |||||||||| |||||||||||    
T  1647249 tataagctattatagagagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcata 1647321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 15200309 - 15200265
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||    
T  15200309 caaacagtctcacaagtacttatgccaacagataagctcaaataa 15200265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 15370300 - 15370252
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||||||| | |||||| ||| |||||||||||||||||||    
T  15370300 ccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtc 15370252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 29430836 - 29430896
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||  ||||||||| |||| |||||||  ||||||||| ||||||||||||||||    
T  29430836 ttttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaataa 29430896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 40158793 - 40158857
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||  |||| ||||||||||||| |||||||||| ||||| |||||||||||    
T  40158793 ctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataag 40158857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 680517 - 680588
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||||||||||  ||| |||||  ||| |||||||||||| |||||  ||||||||||| |||||||||||    
T  680517 ataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttttcata 680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 5752482 - 5752427
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    |||||||||||| ||||| | |||||||  ||||||||| ||||||||||||||||    
T  5752482 ccaaacagtctcgcaagtgcatatgtcaacagataagcttaaataagtcgatcaaa 5752427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 7035392 - 7035341
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||||| |||||||| |||| |||  |||||||||||||||||    
T  7035392 ctcttccaaacagtcgcacaagtatttatctcattagataagctcaaataag 7035341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 30331830 - 30331892
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||  ||| ||||||||||||||||  ||||||||||| ||||||||| |||||||||    
T  30331830 ttttcataagttctcccaaacagtctcacaaa-acttatgtcagtagataagctgaaataagtc 30331892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 33192216 - 33192287
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||| | |||||||| |  | | ||||||||||||  ||||||| |||||||||||||||||||||    
T  33192216 ataagctatcctggagagcttataaatataagctgaaaacagcttatggatatgtcataaactgttttcata 33192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 34652092 - 34652033
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    |||||||||||| |||||||| | |||| ||| ||||||||  |||||||||||||||||    
T  34652092 ataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataa 34652033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 787375 - 787417
Alignment:
Q  31 aagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||||||||||  ||||||||||||||||| |||||||||||    
T  787375 aagctgaaaacagcttatggacatgtcataagctgttttcata 787417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 1494473 - 1494431
Alignment:
Q  31 aagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||| |||||| |||||||||||||||||| |||||||||||    
T  1494473 aagctaaaaacagtttatggacatgtcataagctgttttcata 1494431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 5902576 - 5902534
Alignment:
Q  31 aagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||||| |||||| ||||||||||| |||||||||||    
T  5902576 aagctgaaaacagtttatgaacatgtcataagctgttttcata 5902534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 9996821 - 9996879
Alignment:
Q  100 ataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||| |||| |||| ||||||||||||||||||||  ||  ||||||||||||||||||    
T  9996821 ataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataagtc 9996879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 10567132 - 10567202
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    |||||| || ||||||| |||||||||||||| |||||||||||||  |||  ||| ||| ||||||||||    
T  10567132 ctgtttccacaatctctcccaaacagtctcacgagtacttatgtcaatagagtagcccaactaagtcgatc 10567202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 42419869 - 42419934
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||| |||  ||| ||||||||||||| ||  |||||||||||||||||| ||||||||||||    
T  42419869 ctgttttcgtaagttctcccaaacagtctcaaaaa-acttatgtcagaagataaactcaaataagtc 42419934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 9478375 - 9478440
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| ||||| ||||  ||||||||| |||||||||||||||  | ||||||| |||||||||||    
T  9478375 tgtttgcataaactctctcaaacagtcacacaagtacttatgttggtagataagttcaaataagtc 9478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 32837398 - 32837439
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttat 133  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  32837398 ctgttttcataagttctcccaaacagtctcacaagtacttat 32837439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 38787878 - 38787833
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||| |||||||||| |||||||||||| ||||||||||| ||||    
T  38787878 ccaaatagtctcacaaatacttatgtcagtagataagctcacataa 38787833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 44438895 - 44438826
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttca 71  Q
    ||||| |||| | |||| ||||| |||| ||||||||||||  ||||| ||||||||||| |||||||||    
T  44438895 ataagttatcctggagatcttgtggaaataagctgaaaacaggttatgaacatgtcataagctgttttca 44438826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 44458150 - 44458085
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| ||||||||||||||| || |||   ||| ||||| ||||||||| |||||||||    
T  44458150 tgttttcataagctcttccaaacagtcacaaaagattttaagtcagcagataagcttaaataagtc 44458085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 1318312 - 1318371
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    ||||||||||| ||||  ||||||||||||||||| |||||| ||| |||||| |||||||    
T  1318312 tgttttcataagctctcacaaacagtctcacaagtgcttatg-cagtagataatctcaaat 1318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 26372696 - 26372656
Alignment:
Q  118 tctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||| | ||||||||||||||||||||||||| ||||    
T  26372696 tctcacaaatgcttatgtcagaagataagctcaaatgagtc 26372656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 33192277 - 33192340
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||||| |||||||||||  |||  ||||||||| |||||||||||||||||    
T  33192277 ctgttttcataagttcttc-aaacagtctcatgagtgtttatgtcagcagataagctcaaataag 33192340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 37276837 - 37276889
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    |||||||||||||||||| ||||| | || |||||| || |||||||||||||    
T  37276837 ccaaacagtctcacaagtgcttatattagtagataaacttaaataagtcgatc 37276889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 40759259 - 40759299
Alignment:
Q  116 agtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  40759259 agtctcacaagtgcttatgtcaatagataagctcaaataag 40759299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 44606104 - 44606060
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtca 137  Q
    |||||||||||  ||||||||||||||  ||||||||||||||||    
T  44606104 tgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 22667478 - 22667542
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||| ||||| ||||  ||||||||||||||||| |||||||||| |||||||||||||||||    
T  22667478 ctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 22724117 - 22724181
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||| ||||| ||||  ||||||||||||||||| |||||||||| |||||||||||||||||    
T  22724117 ctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 21872287 - 21872225
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||| || || |||||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  21872287 ttttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagt 21872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 26330317 - 26330255
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||| |||||| |||||||||||||| ||||||| |||| |||||| |||||||||    
T  26330317 tgttttcataagctcttctaaacagtctcacaaatacttatttcagtagataacctcaaataa 26330255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 18405825 - 18405763
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||||  |||| |||||||||||||||  ||||||||||| ||||||||||||||||    
T  18405825 ctgttttcataagttcttgcaaacagtctcacaaa-acttatgtcagtagataagctcaaataa 18405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 24158510 - 24158447
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||| ||||| ||||  |||||||| ||||||||||||||||||| ||||||||| |||||||    
T  24158510 tgtttccataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataag 24158447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 24624253 - 24624295
Alignment:
Q  31 aagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||||| |||||||||||||||||| |||||||||||    
T  24624253 aagctgaaaacagtttatggacatgtcataagctgttttcata 24624295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 20195028 - 20194947
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgat-caaatagactc 172  Q
    |||||||||||| ||||  ||||||||||||||| | ||||||  |||||||||| |||||||| || || |||||||||||    
T  20195028 ctgttttcataagctctcacaaacagtctcacaactgcttatgcaagaagataagttcaaataaatcaatccaaatagactc 20194947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 1395733 - 1395793
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgat-caaatagac 170  Q
    ||||||||||| ||||| |||| |||| |||||||||||||||||||| || |||||||||    
T  1395733 caaacagtctcgcaagtgcttacgtcataagataagctcaaataagtcaatacaaatagac 1395793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 2923567 - 2923619
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||||||  |||||||||||||||  |||||||||| ||||||||    
T  2923567 tcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataagtc 2923619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 20267599 - 20267671
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    ||||||||| |||||||| |||||||||| ||||| ||| |||||  ||||||||||||| ||| | ||||||    
T  20267599 tgttttcatcatctcttcaaaacagtctcgcaagtgcttttgtcaagagataagctcaaacaaggcaatcaaa 20267671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 24624285 - 24624349
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||| |||||||||||||||| |||||| || |||| || ||||||| |||| ||||    
T  24624285 ctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 25129960 - 25130016
Alignment:
Q  99 cataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||| |||||| |||||||||||||||||| |||||||| ||||||| || |||||    
T  25129960 cataagctcttctaaacagtctcacaagtacatatgtcagtagataagttcgaataa 25130016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 50952347 - 50952415
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttc 70  Q
    |||| ||||||| |||||||| | |||| ||||| |||||| |||||| ||||||||||| ||||||||    
T  50952347 ataaactatcttggagagcttatggaaataagcttaaaacagtttatgaacatgtcataagctgttttc 50952415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 6483815 - 6483885
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcat 72  Q
    |||||||||| |||||||||| |  ||| |||||||||||| ||| ||| ||||||||| || ||||||||    
T  6483815 ataagctatcctagagagcttattaaaataagctgaaaacagtttgtggccatgtcatagacggttttcat 6483885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 30657374 - 30657424
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||| ||||| |||| |||||||||| |||||| |||||||||    
T  30657374 ctcttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataa 30657424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 37795686 - 37795763
Alignment:
Q  107 cttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgat-caaatagactctatattaccaat 184  Q
    |||||||||||||| ||||| |||||||||||  |||||||| ||||||||| || |||| |||| |||||||| ||||    
T  37795686 cttccaaacagtcttacaag-acttatgtcagtggataagcttaaataagtcaatccaaagagacgctatattagcaat 37795763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 41033234 - 41033188
Alignment:
Q  109 tccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  41033234 tccaaacagtctcacgagtccttatgtcagtagataaactcaaataa 41033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 26542625 - 26542677
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||||||| |||||||||||||| || ||||||  |||||||||||    
T  26542625 ctcttccaaacagtcttacaagtacttatgtgagtagataa-atcaaataagtc 26542677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 28283591 - 28283530
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||  |||| ||||||||||||||||| || ||||||  | |||||||||||||||    
T  28283591 ttttcataagttctttcaaacagtctcacaagtgctaatgtcatgacataagctcaaataag 28283530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 30923954 - 30923877
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcatatctctc 79  Q
    |||| ||||| ||||||| || | |||| ||||||||||||  |||| |||||||||||| |||||| |||| |||||    
T  30923954 ataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataagctgtttccatagctctc 30923877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 20210904 - 20210860
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||||||||  ||||||||| |||||| |||||||||    
T  20210904 caaacagtctcacaagtggttatgtcagtagataacctcaaataa 20210860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 25447225 - 25447174
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||| |||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  25447225 tcttgcaaacagtctcacaaa-acttatgtcagtagataaactcaaataagtc 25447174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 27795988 - 27795944
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||    
T  27795988 aaacagtttcacaagtgcttatgccagtagataagctcaaataag 27795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 41724306 - 41724350
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||| |||| ||||||||||||||||| ||||||| ||||||||    
T  41724306 caaactgtctgacaagtacttatgtcagtagataagttcaaataa 41724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 45590732 - 45590792
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||| |||||||||||||||||| ||||||  || ||||||| ||||| |||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtc 45590792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 49605827 - 49605783
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||| |||||||||||||||||  ||||||||| |||||||||    
T  49605827 caaacactctcacaagtacttatgctagaagataaactcaaataa 49605783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 50211811 - 50211875
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||||||||  |||  |||||||||| |||||| ||||||| || ||||||||| ||||||||    
T  50211811 tgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagt 50211875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 51130827 - 51130891
Alignment:
Q  94 gttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||| |||| ||||||| | || ||| |||||||| ||| |||| ||||||||||||||    
T  51130827 gttttcataagctctcccaaacaatttcgcaactacttatgccagcagatgagctcaaataagtc 51130891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 4970785 - 4970721
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  4970785 tgttttcataagttctcccaaacagtctcacaag-acttatgtcacgagataagctcaaataagtc 4970721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 8427106 - 8427151
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||||||||||||||||| || ||||||||||||||||    
T  8427106 ccaaacagtctcacaagtacttatgttagtagataagctcaaataa 8427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 34950145 - 34950080
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| ||||||| ||||||||||||||| ||| || ||| | |||||||||||||||||    
T  34950145 tgttttcataagctcttcccaacagtctcacaagtgcttgtgccagcatataagctcaaataagtc 34950080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 33894702 - 33894766
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||||   ||||||||||||||||    
T  33894702 ctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataag 33894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 24048621 - 24048680
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||| ||||||||||||||||   ||||||||||||||| |||||| |||||||||||    
T  24048621 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataaactcaaataagt 24048680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 31002876 - 31002810
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| |||| ||| ||||||||||||||||| | |||||| ||| |||||||||||| ||||||    
T  31002876 ctgtttttataagctcatccaaacagtctcacaattgcttatgacagtagataagctcaattaagtc 31002810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 2825227 - 2825158
Alignment:
Q  96 tttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    ||||||||  ||||||||| |||||||||||| ||||| | || |||||||||||||||| || ||||||    
T  2825227 tttcataagttcttccaaagagtctcacaagtgcttatataagtagataagctcaaataaatcaatcaaa 2825158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 14823859 - 14823798
Alignment:
Q  97 ttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| |||||| ||||| ||||| ||||||||| ||||  |||||||||||||||||||    
T  14823859 ttcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagtc 14823798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 15270866 - 15270805
Alignment:
Q  97 ttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| |||||| ||||| ||||| ||||||||| ||||  |||||||||||||||||||    
T  15270866 ttcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagtc 15270805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 44151470 - 44151405
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| ||||  |||| | ||||||||||||||||||||| | ||||| |||||||||||    
T  44151470 tgttttcataagctctctcaaataatctcacaagtacttatgtcagtatataagttcaaataagtc 44151405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39539838 - 39539778
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||||||| | | ||||||||| ||| ||||||||||||  |||||||||||||||||    
T  39539838 tataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataa 39539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 9423650 - 9423579
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||| | |||||||| | |||| ||||||||||||  ||||| |||||||||||| ||||| ||||    
T  9423650 ataagctatcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgtttccata 9423579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 28727756 - 28727693
Alignment:
Q  94 gttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||| ||||| ||||  ||||||||||| ||||| |||| |||| |||||||||||||||||||    
T  28727756 gtttccataagctctctcaaacagtctcgcaagttcttaggtcaaaagataagctcaaataagt 28727693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 34035996 - 34036058
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||  ||||||||  |||||||||| ||| |||||||| |||||||||||||||||||    
T  34035996 ttttcataagttcttccaagtagtctcacaa-tacatatgtcagtagataagctcaaataagtc 34036058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 12834989 - 12834947
Alignment:
Q  31 aagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||||| |||||||||||||||||| |||||| ||||    
T  12834989 aagctgaaaacagtttatggacatgtcataagctgtttccata 12834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 19302557 - 19302492
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||  ||| ||||| | ||||||||  ||||||||||| |||||||||||||||||||    
T  19302557 ctgttttcataaattctcccaaatattctcacaaa-acttatgtcagtagataagctcaaataagtc 19302492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 3836675 - 3836614
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||  ||| ||||||||| |||||||| |||| | ||| |||||||||||||||||    
T  3836675 ttttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataag 3836614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 25670636 - 25670571
Alignment:
Q  8 tatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||| ||||||||||  ||| |||||||||||| |||||  |||||||||||  ||||||||||    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcata 25670571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 25907612 - 25907567
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||||||||||||| |||||||||| |||| |||||||| ||||    
T  25907612 aaacagtctcacaagtgcttatgtcagtagattagctcaaacaagt 25907567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 8094381 - 8094445
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  |||  |||| |||||||||||| ||||||  || |||||||||||||||||    
T  8094381 ctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 29363603 - 29363647
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||||||| ||||||| || ||||||| |||||||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataag 29363647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 47007069 - 47007121
Alignment:
Q  113 aacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    |||||||||||||||||||||| ||   ||||||||||||||| || ||||||    
T  47007069 aacagtctcacaagtacttatgccaatggataagctcaaataactcaatcaaa 47007121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 33204370 - 33204319
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  33204370 ccaaacagtctcacaaa-acttatgtcagtagataagctcaaataagtcgatc 33204319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 41638303 - 41638239
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||||||| |||||||||||||||| | |||||| ||| ||||| |||||| ||||    
T  41638303 ctgttttcataatctctcccaaacagtctcacaaatgcttatgccagtagataggctcaattaag 41638239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 15581342 - 15581393
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||| |||||||||| |||||||||| ||||||||| |||||||    
T  15581342 ctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21002244 - 21002294
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||||||||||||| ||||||  || |||||||||||||||||    
T  21002244 tcttccaaacagtctcacaagttcttatgcaagtagataagctcaaataag 21002294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 32515436 - 32515374
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaata 154  Q
    |||||| ||||| |||| |||||||||||||||||| ||||||| || |||||| ||||||||    
T  32515436 ctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 28837328 - 28837275
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaa 165  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||    
T  28837328 aaacagtctctcaagtgcttatgtcagtagataagctcaaataagccaatcaaa 28837275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 46504212 - 46504147
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||| |||| || ||||||||||||| |||||||| | | |||||| ||||||||||||    
T  46504212 tgttttcataagctctaccgaacagtctcacaaatacttatgccggtagataaactcaaataagtc 46504147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 2295172 - 2295235
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||| ||||||||||||||||  ||||||| ||| |||||||||||||||||    
T  2295172 ctgttttcataagttctcccaaacagtctcacaa-aacttatgccagtagataagctcaaataag 2295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 6292585 - 6292633
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  6292585 ccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtc 6292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 4276639 - 4276580
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||| || ||||||| ||||| |||| | |||||| ||||||||||||||||||||||    
T  4276639 tcataagcttttccaaatagtctaacaaatgcttatgccagaagataagctcaaataagt 4276580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 18327140 - 18327077
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||||  ||||||||| ||| ||| |||| |||||| ||| |||||||||||||||||    
T  18327140 tgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataag 18327077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 24460377 - 24460330
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||| || ||||||| ||||||| |||||||||||    
T  24460377 caaacagtctcacaagtgctcatgtcagtagataagttcaaataagtc 24460330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27140491 - 27140558
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    ||||||||||| | |||||||| |  ||| ||||||||||||  ||||||||||||||||| ||||||    
T  27140491 tataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28689509 - 28689442
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    ||||||||||||| || ||||| |  ||| ||||||||||||  ||||||||||||||||| ||||||    
T  28689509 tataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgttt 28689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 31517734 - 31517671
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||| ||||  ||| |||||||||||||||||| |||||| ||| | |||||||||||||||    
T  31517734 tgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataag 31517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 4757414 - 4757500
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc-gatcaaatagactctatatt 178  Q
    |||||||||||  ||| |||||  |||||||||||  ||||||||  |||||||||||||||||||  | |||| ||||||||||||    
T  4757414 tgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaataagtcaaaccaaagagactctatatt 4757500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 10199464 - 10199394
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcat 72  Q
    ||||||||| ||||||||||| |  ||| ||||||||||||  ||||| ||||||||||| || |||||||    
T  10199464 ataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcat 10199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 29793669 - 29793627
Alignment:
Q  116 agtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||  ||||||||| |||||||||||||||||||    
T  29793669 agtctcacaagtgtttatgtcagtagataagctcaaataagtc 29793627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 36070257 - 36070319
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||||||||||  ||| | |||||||||||||||| |||||| ||||||||||  ||||||||    
T  36070257 tgttttcataagttctcctaaacagtctcacaagtgcttatgccagaagataatatcaaataa 36070319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 3597263 - 3597210
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||||||||||||||  |||| |||  |||||| ||||||||||||    
T  3597263 ctcttccaaacagtctcacaagtggttatatcattagataacctcaaataagtc 3597210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 11217991 - 11217942
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcg 159  Q
    |||||| ||||||||||| || ||||||| |||| |||||||||||||||    
T  11217991 ccaaaccgtctcacaagtgctcatgtcagtagattagctcaaataagtcg 11217942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 12564481 - 12564428
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||| |||||||||| ||||||| ||||| |||| | |||||||||||||||||    
T  12564481 ctctcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagtc 12564428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 17009576 - 17009511
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| ||||| |||| ||||||||||  ||||| | ||||||||| |||||| ||||||||||||    
T  17009576 tgtttccataagctctcccaaacagtccaacaaggaattatgtcagtagataaactcaaataagtc 17009511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 50644248 - 50644184
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||||  ||| ||||||||||||||||  || ||||| || |||||||||||||||||||    
T  50644248 tgttttcataagttctcccaaacagtctcacaa-aacatatgttagtagataagctcaaataagtc 50644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 4622182 - 4622234
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||| |||||| |||||||||  || |||||| |||||||||    
T  4622182 tcttccaaacagtctaacaagttcttatgtcattagttaagcttaaataagtc 4622234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 10199385 - 10199337
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| ||| |||||||| ||||||| || |||||||||||||||||||    
T  10199385 ccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtc 10199337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 11639461 - 11639401
Alignment:
Q  13 tagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||||||||| |  ||| ||||| ||||||  ||||||||||||||||| |||||||||||    
T  11639461 tagagagcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcata 11639401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 15784411 - 15784462
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatc 162  Q
    ||||||||||| ||||  |||||||| || |||||||||||||||||||||||    
T  15784411 ccaaacagtcttacaaa-acttatgttagtagataagctcaaataagtcgatc 15784462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 15819202 - 15819262
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||| |||||||||| |||||||||||||| ||| ||||||  ||||| |||||    
T  15819202 tcataagctctcccaaacagtcacacaagtacttatggcagtagataaattcaaacaagtc 15819262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 28837026 - 28836982
Alignment:
Q  106 tcttccaaacagtctcacaagtacttatgtcagaagataagctca 150  Q
    ||||| |||||||||||||||| |||||||||| |||| ||||||    
T  28837026 tcttctaaacagtctcacaagtgcttatgtcagtagattagctca 28836982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 35080122 - 35080066
Alignment:
Q  5 agctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||| | ||||||||||||||| ||||| ||||||  ||||| |||||||||||    
T  35080122 agctatcatggagagcttgtcgaaataagctcaaaacagcttatgaacatgtcataa 35080066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 38001671 - 38001734
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||| ||||||||||||||||  |||||||||||  ||||| ||||||||||    
T  38001671 ctgttttcataagttctcccaaacagtctcacaa-aacttatgtcagttgataaactcaaataag 38001734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 37968971 - 37969018
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  37968971 caaacagtttcacaagtacttatgtcagtagataagctcaaacaagtc 37969018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 14714835 - 14714777
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    |||||||||||||| ||||| ||| |||||||| ||||||||||  |||||||||||||    
T  14714835 ttttcataatctctcccaaatagtttcacaagtgcttatgtcagtggataagctcaaat 14714777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 38034022 - 38033956
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| ||||  ||||||||||||||||||| || |||||| ||| ||| |||||||||||||||    
T  38034022 ctgttttaataacttcttccaaacagtctcacaggtgcttatgccagtagaaaagctcaaataagtc 38033956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 13781857 - 13781812
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctca 150  Q
    |||| |||||||||||||||||||||||||| || |||||||||||    
T  13781857 ctctaccaaacagtctcacaagtacttatgttagtagataagctca 13781812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 17498791 - 17498852
Alignment:
Q  97 ttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||| |||||| ||||| ||||| ||||||||| ||||  |||||||||||||||||||    
T  17498791 ttcataagctcttcaaaacaatctcaaaagtacttaagtcattagataagctcaaataagtc 17498852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 10391418 - 10391481
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||| |||| |||||||||||| ||||||||||  ||||| ||| ||||||||| |||||||    
T  10391418 tgtttttataaactcttccaaacaatctcacaagtgattatgccagcagataagcttaaataag 10391481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 499726 - 499660
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||  ||| |||||||| || ||| || |||||||||| || ||||||||||||||||    
T  499726 ctgttttcataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaataagtc 499660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 10791089 - 10791135
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||    
T  10791089 aaacagtctcacaagtacttatgtcaattgataagctgaaataagtc 10791135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 10907454 - 10907488
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagt 127  Q
    ||||||||||| |||||||||||||||||||||||    
T  10907454 tgttttcataagctcttccaaacagtctcacaagt 10907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 36796686 - 36796636
Alignment:
Q  108 ttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||||||||||||  ||||||||  |||||||||||||||||||    
T  36796686 ttccaagcagtctcacaagtgtttatgtcattagataagctcaaataagtc 36796636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 37611209 - 37611147
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||| ||||  |||||| |||||||||||||| || ||| ||||||| ||||||||    
T  37611209 tgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 37787939 - 37787877
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||| ||||  |||||| |||||||||||||| || ||| ||||||| ||||||||    
T  37787939 tgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 40205130 - 40205064
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    |||||||||| | |||||||| | |||| ||||||||||||  |||||||||||| |||| ||||||    
T  40205130 ataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgttt 40205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 2103179 - 2103256
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgatcaaatagac 170  Q
    ||||||||||  |||||| ||||||| |||||  || |||||||||   |||| ||||||||||||||||||| ||||    
T  2103179 tgttttcatacgctcttctaaacagtttcacacttagttatgtcagttaataaactcaaataagtcgatcaaacagac 2103256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 10771864 - 10771819
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||    
T  10771864 caaacaatctcacaagtgcttatgccagtagataagctcaaataag 10771819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 11457174 - 11457239
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| ||||| |||||| ||||||||||||||||  || || ||  |||||||||||||||||||    
T  11457174 tgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataagtc 11457239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 12459995 - 12459930
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||   ||| ||||||||||||||| || |||||||||| ||||||||  |||||||||    
T  12459995 tgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagataagccgaaataagtc 12459930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 15015922 - 15015982
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||  ||| ||||||||||||||||   |||||||||| |||||||||||||||||    
T  15015922 ttttcataagttctcccaaacagtctcacaaag-cttatgtcagtagataagctcaaataag 15015982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 2568733 - 2568797
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||||| |||||||||| ||||| ||||   ||| |||||||||||||||||    
T  2568733 ctgttttcataagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataag 2568797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 6749429 - 6749473
Alignment:
Q  113 aacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||||||||||||||||||||| | | |||| |||||||||||    
T  6749429 aacagtctcacaagtacttatgtccgcatataatctcaaataagt 6749473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 7550494 - 7550450
Alignment:
Q  111 caaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||| ||||||||||||| |||||||||  |||||||||||||||    
T  7550494 caaagagtctcacaagtaattatgtcagtggataagctcaaataa 7550450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 12425667 - 12425714
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  12425667 ccaaacagtctcacaaa-acttatgacagtagataagctcaaataagtc 12425714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 16937877 - 16937814
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||||||  ||||||||||| ||||||||  |||||||  || |||||||||||||||||    
T  16937877 ctgttttcataagttcttccaaacactctcacaa-aacttatgctagtagataagctcaaataag 16937814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 19138760 - 19138712
Alignment:
Q  15 gagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaac 63  Q
    |||||||| | |||| |||||||||||| |||||| |||||||||||||    
T  19138760 gagagcttatggaaataagctgaaaacaatttatgtacatgtcataaac 19138712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 28586819 - 28586763
Alignment:
Q  5 agctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||| |||||||||| |||||| ||||||||||||  ||| ||| |||||||||    
T  28586819 agctatcctagagagcttatcgaaataagctgaaaacagcttacggatatgtcataa 28586763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 38104913 - 38104873
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaaca 42  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  38104913 ataagctatcttagagagcttatggaaataagctgaaaaca 38104873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 160029 - 159963
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    |||||||||| || ||||||||| |||| |||||||||||   |||| |||||||||||||||||||    
T  160029 ataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataaactgttt 159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 34939758 - 34939824
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 68  Q
    |||||||||| | ||||| || | |||| |||||||||||| |||||||||||||||||| ||||||    
T  34939758 ataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 2732242 - 2732185
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctc 149  Q
    |||||| ||||| || |||||||||||||||||||| |||||||||| ||| ||||||    
T  2732242 ctgtttccataagcttttccaaacagtctcacaagtgcttatgtcagtagacaagctc 2732185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 32976061 - 32976110
Alignment:
Q  100 ataatctcttccaaacagtctcacaagtacttatgtcagaagataagctc 149  Q
    |||| |||||||||||||||||||||||||||||| ||| | ||||||||    
T  32976061 ataagctcttccaaacagtctcacaagtacttatgccagtaaataagctc 32976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 33067172 - 33067237
Alignment:
Q  2 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtt 67  Q
    |||||||||||| |||||||||| |||| || ||||||||  ||||||||||| || |||||||||    
T  33067172 ataagctatcttggagagcttgtagaaataaactgaaaacgatttatggacatttcctaaactgtt 33067237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 33385604 - 33385665
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    |||||| ||||| |||||||||||||| |||||||| ||||| |||| ||||||| ||||||    
T  33385604 ctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaat 33385665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 2455689 - 2455749
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    ||||| ||||| ||||| ||||||||||||||| | |||||||| ||||| ||||||||||    
T  2455689 tgtttccataagctctttcaaacagtctcacaaatgcttatgtctgaagaaaagctcaaat 2455749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 26559233 - 26559169
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    |||||||||||  |||||||||||||||||||| | |||||| ||| || ||| |||||||||||    
T  26559233 tgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagt 26559169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34538275 - 34538207
Alignment:
Q  1 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtttt 69  Q
    ||||||||||| ||||||| ||||  ||| |||||||||| | |||||||||||||| ||| |||||||    
T  34538275 tataagctatcctagagagtttgtataaataagctgaaaatagtttatggacatgtcgtaagctgtttt 34538207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 27894114 - 27894169
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaat 153  Q
    |||||| ||| | |||||||||||||||||||||||||| | || |||||||||||    
T  27894114 tcataagctcgttcaaacagtctcacaagtacttatgtccgtaggtaagctcaaat 27894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 34544176 - 34544129
Alignment:
Q  26 gaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    |||| ||| |||||| | ||||||||||||||||||||||||||||||    
T  34544176 gaaataagatgaaaatagtttatggacatgtcataaactgttttcata 34544129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 1669849 - 1669783
Alignment:
Q  7 ctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttcata 73  Q
    ||||| ||||| |||||||||||  |||||||||||  |||| ||||||||||||  ||||||||||    
T  1669849 ctatcctagagggcttgtcgaaatgagctgaaaacagcttatagacatgtcataagttgttttcata 1669783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 4420658 - 4420716
Alignment:
Q  3 taagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||||||| |||||||| | |||| ||||||||||||  ||||| |||||||||||    
T  4420658 taagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 7351646 - 7351600
Alignment:
Q  112 aaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  7351646 aaacaatctcacaagtgcttatgtcagtagataaactcaaataagtc 7351600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 27857434 - 27857496
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||||||||| |||| ||||||||| ||||||||   |||||||| |||||| |||||||||    
T  27857434 tgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataa 27857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 29249468 - 29249534
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||||||||||  ||| | ||||||||| ||||||||||||  ||| | |||||||||||||||||    
T  29249468 ctgttttcataagatctacgaaacagtcttacaagtacttataacagtaaataagctcaaataagtc 29249534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 33089605 - 33089647
Alignment:
Q  116 agtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||||||| ||| |||||||| |||||||||||||||||||    
T  33089605 agtctcacaaatacatatgtcagtagataagctcaaataagtc 33089647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 35070444 - 35070398
Alignment:
Q  110 ccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    |||||||||| ||||||| ||||||| || |||||||||||||||||    
T  35070444 ccaaacagtcccacaagtgcttatgttagtagataagctcaaataag 35070398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 281830 - 281777
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||| ||||||||||||||||||||||||||||  | |||| ||||| ||||||    
T  281830 ctctcccaaacagtctcacaagtacttatgtcactacataatctcaagtaagtc 281777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 2455886 - 2455951
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| ||||| |||||| ||||| |||| ||||| |||||| | | |||||||||||||||||||    
T  2455886 tgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaataagtc 2455951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 3181051 - 3180998
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    ||||| |||| |||||||||||| |||||||| | ||||||| |||||||||||    
T  3181051 ctctttcaaatagtctcacaagtgcttatgtctgtagataagttcaaataagtc 3180998  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 5551528 - 5551589
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||||| ||||  ||||||| |||||||||||| || |||| ||| |||||||||||||    
T  5551528 ttttcataagctctgtcaaacagactcacaagtactcatatcagtagacaagctcaaataag 5551589  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 10031811 - 10031860
Alignment:
Q  96 tttcataatctcttccaaacagtctcacaagtacttatgtcagaagataa 145  Q
    |||||||  ||||| ||||||||||||||||| |||||||||| ||||||    
T  10031811 tttcataggctctttcaaacagtctcacaagtgcttatgtcagtagataa 10031860  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 30533865 - 30533941
Alignment:
Q  93 tgttttcataatctcttccaaacagtct--cacaagtacttatgtcagaagataagctcaaataagtcgatcaaata 167  Q
    |||||| |||| |||| ||||||| |||  ||||||||||||| |||| |||||||||| |||||||| ||| ||||    
T  30533865 tgtttttataagctctcccaaacaatctatcacaagtacttatatcagtagataagctcgaataagtcaatccaata 30533941  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 31774455 - 31774516
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataag 156  Q
    ||||||| | |||||||||||||||||| |||| |||||| | | |||||| ||||||||||    
T  31774455 ttttcatgagctcttccaaacagtctcataagtgcttatgccggtagataaactcaaataag 31774516  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 2460145 - 2460081
Alignment:
Q  93 tgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagt 157  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||  ||   ||||||||||||||||    
T  2460145 tgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagt 2460081  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 31461750 - 31461810
Alignment:
Q  95 ttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    ||||| ||| ||||| | ||||||||||||||||||||||  |  ||||||||||||||||    
T  31461750 ttttcgtaagctcttgcgaacagtctcacaagtacttatgcaaatagataagctcaaataa 31461810  T

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Target: scaffold0159 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 27017 - 27074
Alignment:
Q  4 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    |||||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||    
T  27017 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataa 27074  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 1072 - 989
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgat-caaatagactcta 174  Q
    |||||||||||| ||||||||||||| |||||| ||| ||||| ||  ||||||||| | ||||||| || |||| ||||||||    
T  1072 ctgttttcataagctcttccaaacagactcacatgtatttatgacaatagataagctaacataagtcaatccaaacagactcta 989  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 2903 - 2986
Alignment:
Q  92 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtcgat-caaatagactcta 174  Q
    |||||||||||| ||||||||||||| |||||| ||| ||||| ||  ||||||||| | ||||||| || |||| ||||||||    
T  2903 ctgttttcataagctcttccaaacagactcacatgtatttatgacaatagataagctaacataagtcaatccaaacagactcta 2986  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 9760 - 9710
Alignment:
Q  105 ctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataa 155  Q
    |||| ||||||||||||||||||| |||||| || |||||| |||||||||    
T  9760 ctctcccaaacagtctcacaagtatttatgttagtagataaactcaaataa 9710  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 12758 - 12701
Alignment:
Q  4 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 61  Q
    ||||||||||||||||||| | ||   ||||||||||||  |||||||||||||||||    
T  12758 aagctatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataa 12701  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 27658 - 27711
Alignment:
Q  99 cataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaa 152  Q
    ||||| |||| ||||||||||||| |||||| |||||||| |||| ||||||||    
T  27658 cataagctctcccaaacagtctcagaagtacatatgtcagtagatcagctcaaa 27711  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 9812 - 9784
Alignment:
Q  45 ttatggacatgtcataaactgttttcata 73  Q
    |||||||||||||||||||||||||||||    
T  9812 ttatggacatgtcataaactgttttcata 9784  T

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Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 3983 - 4043
Alignment:
Q  94 gttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaata 154  Q
    |||| ||||| ||||||||||||||||||||||| ||||| |||  | ||||| |||||||    
T  3983 gtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttcaaata 4043  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 6891 - 6951
Alignment:
Q  98 tcataatctcttccaaacagtctcacaagtacttatgtcagaagataagctcaaataagtc 158  Q
    |||||| |||| ||||||||||||||||||  |||||  || |||||| ||||||||||||    
T  6891 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtc 6951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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