View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0208-INSERTION-16 (Length: 742)
Name: NF0208-INSERTION-16
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-INSERTION-16 |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 53 - 741
Target Start/End: Original strand, 10323093 - 10323779
Alignment:
| Q |
53 |
cattcaactaaatccattagctaacaaaattagttgtttttcataatattctaggaactaaattaatgtacttttcatagttagaatcttttagttgata |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10323093 |
cattcaactaaatccattagctaacaaaattagttgtttttcataatattctaggaactaaattaatgtacttttcatagttagaatcttttagttgata |
10323192 |
T |
|
| Q |
153 |
taaatattttagccaccaaaataacggagagtgataatttagataccaaattaactattctttaaaatattctccattgtaaaataaaaataatttttca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10323193 |
taaatattttagccaccaaaataacggagagtgataatttagataccaaattaactattctttaaaatactctccattgtaaaataaaaataatttttca |
10323292 |
T |
|
| Q |
253 |
gtcattaaaatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcaaacatttgtggtggtattacaatttacaaatata |
352 |
Q |
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| T |
10323293 |
gtca-taagatactggaatatggtataaaatgactcgcaagttggatcacttgtagtgtcacatcagacatttgtggtggtattacaatttacaaatata |
10323391 |
T |
|
| Q |
353 |
ttgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatacgcatgtatnnnnnnnnnnnnnnnnnnnntt |
452 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10323392 |
ttgtatttattgaaacaattgtgaatataaaggagctgatcattgatagatcagtacatgacaaagatacgcatgtat-aaaaaaattagaataagaatt |
10323490 |
T |
|
| Q |
453 |
caactttgtttacattggtagtttgtcctttgttactttaattgaaaggtgctccaaatatttaacattatcattaatttactaactcaaagaagatcct |
552 |
Q |
| |
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| T |
10323491 |
caactttgtttacattggtagtttgtcctttgttactttaattgaaaggtgctccaaatatttaacattatcattaatttactaactcaaagaagatcct |
10323590 |
T |
|
| Q |
553 |
aagttgattttcgaaatattgtttgtatatgtagttcaaatggctgggtcaatgatgatatacatccacaaatggttaaggatttagttaaacttgaagt |
652 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10323591 |
aagttgattttcgaaatattgtttgtatatgtagttcaaatggcggggtcaatgatgatatacatgcacaaatggttaaggatttagttaaacttgaagt |
10323690 |
T |
|
| Q |
653 |
ttcactttctatgggtgatcatgataatccccataaagcatcaagtataattgtttttaattttgcagtaagttctataactcaattat |
741 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |
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| T |
10323691 |
ttcactttctatgggtgatcattataatccccataaagcatcaagtataattgtttttaattttgcagtaaatcctataattcaattat |
10323779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 14198352 - 14198405
Alignment:
| Q |
74 |
taacaaaattagttgtttttcataatattctaggaactaaattaatgtactttt |
127 |
Q |
| |
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|||||||||| ||||||||||||||| | ||| ||||||||||||||| |||| |
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| T |
14198352 |
taacaaaattgattgtttttcataatagtttagaaactaaattaatgtattttt |
14198405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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