View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0208-INSERTION-17 (Length: 838)

Name: NF0208-INSERTION-17
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0208-INSERTION-17
NF0208-INSERTION-17
[»] chr6 (8 HSPs)
chr6 (8-821)||(28138008-28138822)
chr6 (612-790)||(12938681-12938860)
chr6 (627-790)||(33694835-33694998)
chr6 (359-430)||(6982835-6982906)
chr6 (361-424)||(10501975-10502038)
chr6 (611-654)||(12466438-12466481)
chr6 (667-741)||(14532057-14532131)
chr6 (508-588)||(30587503-30587579)
[»] chr4 (14 HSPs)
chr4 (611-821)||(42976369-42976580)
chr4 (612-790)||(27292985-27293164)
chr4 (618-790)||(4919059-4919232)
chr4 (119-294)||(2048742-2048920)
chr4 (713-802)||(20133410-20133499)
chr4 (713-811)||(55919365-55919463)
chr4 (713-811)||(28679508-28679606)
chr4 (720-793)||(45989606-45989679)
chr4 (360-434)||(39735815-39735889)
chr4 (340-425)||(2048966-2049051)
chr4 (359-428)||(3958945-3959014)
chr4 (720-793)||(42069042-42069115)
chr4 (720-793)||(47031455-47031528)
chr4 (713-766)||(15531234-15531287)
[»] chr3 (12 HSPs)
chr3 (611-821)||(31658787-31658998)
chr3 (612-790)||(50650391-50650570)
chr3 (627-811)||(12938455-12938640)
chr3 (713-814)||(5232946-5233047)
chr3 (713-814)||(20104322-20104423)
chr3 (713-802)||(39833218-39833307)
chr3 (627-741)||(29833329-29833444)
chr3 (493-607)||(4292984-4293095)
chr3 (612-787)||(33216657-33216833)
chr3 (713-784)||(36950163-36950234)
chr3 (713-766)||(29703559-29703612)
chr3 (713-766)||(53282294-53282347)
[»] chr5 (11 HSPs)
chr5 (612-790)||(30624903-30625082)
chr5 (627-790)||(41413442-41413606)
chr5 (627-811)||(1828466-1828651)
chr5 (627-811)||(40313931-40314116)
chr5 (612-787)||(31482071-31482247)
chr5 (343-430)||(33417416-33417503)
chr5 (713-811)||(24788302-24788400)
chr5 (97-293)||(33417157-33417366)
chr5 (713-766)||(39884696-39884749)
chr5 (365-434)||(31610042-31610111)
chr5 (340-379)||(15867381-15867420)
[»] chr1 (10 HSPs)
chr1 (612-790)||(27286203-27286382)
chr1 (612-790)||(52385813-52385992)
chr1 (628-810)||(39241614-39241793)
chr1 (713-811)||(12981521-12981619)
chr1 (713-811)||(45348246-45348344)
chr1 (361-434)||(42080685-42080758)
chr1 (720-789)||(45325635-45325704)
chr1 (212-298)||(17937621-17937709)
chr1 (212-260)||(17867361-17867409)
chr1 (381-428)||(43403894-43403941)
[»] chr2 (18 HSPs)
chr2 (612-790)||(14096295-14096474)
chr2 (700-821)||(18977078-18977200)
chr2 (188-299)||(18559840-18559952)
chr2 (713-814)||(37078947-37079048)
chr2 (713-811)||(15330735-15330833)
chr2 (713-811)||(37261675-37261773)
chr2 (713-811)||(14810093-14810191)
chr2 (713-811)||(16429864-16429962)
chr2 (713-811)||(17690604-17690702)
chr2 (365-430)||(21949895-21949960)
chr2 (713-784)||(33755075-33755146)
chr2 (218-260)||(21950067-21950109)
chr2 (713-766)||(7089225-7089278)
chr2 (381-434)||(41411516-41411569)
chr2 (612-662)||(18977214-18977264)
chr2 (381-428)||(40275158-40275205)
chr2 (365-434)||(9446973-9447042)
chr2 (359-432)||(14555887-14555960)
[»] chr7 (14 HSPs)
chr7 (612-790)||(19436711-19436890)
chr7 (612-786)||(29833948-29834123)
chr7 (713-814)||(47327942-47328043)
chr7 (626-747)||(29258440-29258562)
chr7 (119-294)||(38835898-38836075)
chr7 (713-811)||(45972423-45972521)
chr7 (340-430)||(8308208-8308298)
chr7 (713-797)||(29243380-29243462)
chr7 (720-793)||(6442633-6442706)
chr7 (340-425)||(38836121-38836206)
chr7 (724-793)||(34094118-34094187)
chr7 (359-430)||(49094543-49094614)
chr7 (359-431)||(30559359-30559431)
chr7 (361-424)||(25862613-25862676)
[»] chr8 (10 HSPs)
chr8 (119-299)||(40715703-40715887)
chr8 (627-787)||(13802682-13802843)
chr8 (713-811)||(531684-531782)
chr8 (340-430)||(6596498-6596588)
chr8 (713-797)||(30945445-30945527)
chr8 (663-793)||(23613574-23613705)
chr8 (713-784)||(3879472-3879543)
chr8 (221-294)||(6596378-6596452)
chr8 (359-428)||(19168178-19168247)
chr8 (340-425)||(40715928-40716013)
[»] scaffold0166 (1 HSPs)
scaffold0166 (713-811)||(30685-30783)
[»] scaffold0098 (1 HSPs)
scaffold0098 (212-260)||(21800-21848)
[»] scaffold0141 (1 HSPs)
scaffold0141 (362-428)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (359-428)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 726; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 28138822 - 28138008
Alignment:
Q  8 ggattcggggaggcgtttatctccacccttggtgaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagc 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138822 ggattcggggaggcgtttatctccacccttggagaatgatgtaattgttgttgttccctcaacttctactcttgttactggtttgcctggtttggatagc 28138723  T
Q  108 acactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138722 acactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaaccagtgcatgctgcaaatg 28138623  T
Q  208 tttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138622 tttgttcttctgaagctcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaaca 28138523  T
Q  308 accaagaacnnnnnnnnnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtca 407  Q
    |||||||||                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138522 accaagaacaaaaaggaaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtca 28138423  T
Q  408 aaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138422 aaagtaatcctaaatatttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagag 28138323  T
Q  508 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138322 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaa 28138223  T
Q  608 -gtacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatg 706  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28138222 ggtacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatg 28138123  T
Q  707 gacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgct 806  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138122 gacaagtttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgct 28138023  T
Q  807 ctccttttatttccc 821  Q
    |||||||||||||||    
T  28138022 ctccttttatttccc 28138008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 12938681 - 12938860
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||| ||||||| |||| |||  |||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  12938681 agtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagaca 12938780  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  12938781 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 12938860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 627 - 790
Target Start/End: Original strand, 33694835 - 33694998
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 726  Q
    ||||||| |||| |||| ||||||||| ||||   ||| ||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||||||    
T  33694835 ccaatcagattttaagtgatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatc 33694934  T
Q  727 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||  |||||||||| |||| || ||||||||||||||||  | |||||| ||||||||||||    
T  33694935 ttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttctt 33694998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 430
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  361 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 424  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 654
Target Start/End: Original strand, 12466438 - 12466481
Alignment:
Q  611 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtc 654  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 667 - 741
Target Start/End: Complemental strand, 14532131 - 14532057
Alignment:
Q  667 aattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagattt 741  Q
    |||| ||||||| || |||||||| ||||||  ||||||||||| ||||| |||| |||||||| ||||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagattt 14532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 588
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  508 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 588  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 611 - 821
Target Start/End: Original strand, 42976369 - 42976580
Alignment:
Q  611 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  42976369 cagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagaca 42976468  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 810  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| |||||| ||||||    
T  42976469 agtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatcaattctctctcc 42976568  T
Q  811 t-tttatttccc 821  Q
    | ||||||||||    
T  42976569 tctttatttccc 42976580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 27292985 - 27293164
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 27293084  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27293085 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27293164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 618 - 790
Target Start/End: Original strand, 4919059 - 4919232
Alignment:
Q  618 ttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggacaagttta 716  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaagttta 4919158  T
Q  717 tttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||| |||||||| ||||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  4919159 tttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 4919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 2048742 - 2048920
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttg---gaaccagtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||| |||||||| |||||| ||||||||||| || ||||||| ||||| ||||||   || ||||||||| |||||  ||||||||||    
T  2048742 ttgtgctatgcctcagcctatcactacttactacacctctctatcagcagacaagcttcctgttttgaaggatccagtgcatactgcagttgtttgttct 2048841  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgt 294  Q
    |||| ||||||||||||||| |||| |||||||||||||| |||||||||||| ||||  |||||||| |||||||||||    
T  2048842 tctgcagctcagagaagtgtagaca-tttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgt 2048920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 713 - 802
Target Start/End: Original strand, 20133410 - 20133499
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 802  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 20133499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 55919463 - 55919365
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 55919365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 28679508 - 28679606
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||| ||||||||||  |||| ||||||||| ||| ||| |||||||||||   |||||||||||||||||||||||||||||||||  |||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcct 28679606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 720 - 793
Target Start/End: Complemental strand, 45989679 - 45989606
Alignment:
Q  720 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 793  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 45989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 360 - 434
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  360 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 434  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 425  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 720 - 793
Target Start/End: Complemental strand, 42069115 - 42069042
Alignment:
Q  720 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 793  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 42069042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 720 - 793
Target Start/End: Complemental strand, 47031528 - 47031455
Alignment:
Q  720 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 793  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 47031455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 766
Target Start/End: Complemental strand, 15531287 - 15531234
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 766  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 6e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 611 - 821
Target Start/End: Complemental strand, 31658998 - 31658787
Alignment:
Q  611 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    ||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||    
T  31658998 cagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagaca 31658899  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 810  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| || |||||| ||||||    
T  31658898 agtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatcaattctctctcc 31658799  T
Q  811 t-tttatttccc 821  Q
    | ||||||||||    
T  31658798 tctttatttccc 31658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 612 - 790
Target Start/End: Complemental strand, 50650570 - 50650391
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 50650471  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  50650470 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 50650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 627 - 811
Target Start/End: Original strand, 12938455 - 12938640
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  12938455 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 12938554  T
Q  726 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  12938555 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 12938640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 713 - 814
Target Start/End: Original strand, 5232946 - 5233047
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 812  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  813 tt 814  Q
    ||    
T  5233046 tt 5233047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 713 - 814
Target Start/End: Original strand, 20104322 - 20104423
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 812  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcctt 20104421  T
Q  813 tt 814  Q
    ||    
T  20104422 tt 20104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 713 - 802
Target Start/End: Complemental strand, 39833307 - 39833218
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 802  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 39833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 627 - 741
Target Start/End: Original strand, 29833329 - 29833444
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  29833329 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 29833428  T
Q  726 cttaaaggttagattt 741  Q
    ||||| ||||||||||    
T  29833429 cttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 4292984 - 4293095
Alignment:
Q  493 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 590  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  591 tagcctttatcaaaaaa 607  Q
    |||||||||| ||||||    
T  4293079 tagcctttataaaaaaa 4293095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 612 - 787
Target Start/End: Complemental strand, 33216833 - 33216657
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||| | | ||||||||| |||| |||| ||||||||||  | |||  |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  33216833 agtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatatgttccaccatagaca 33216734  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 787  Q
      |||| ||||||||||||| ||||||||||  |||| || |||  |||| ||||||  ||||||| ||| ||||||    
T  33216733 gatttacttcatgatcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 784  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 766
Target Start/End: Complemental strand, 29703612 - 29703559
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 766  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 713 - 766
Target Start/End: Original strand, 53282294 - 53282347
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 766  Q
    |||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 1e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 30624903 - 30625082
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttcatatgttccaccatagaca 30625002  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    |||||||||||  || |||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  30625003 agtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 30625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 627 - 790
Target Start/End: Complemental strand, 41413606 - 41413442
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  41413606 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 41413507  T
Q  726 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | |||||||||||||||||    
T  41413506 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttctt 41413442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 627 - 811
Target Start/End: Original strand, 1828466 - 1828651
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  1828466 ccaatcagatttcaagccatgacacgtcagatgttatgacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 1828565  T
Q  726 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  1828566 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 1828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 627 - 811
Target Start/End: Original strand, 40313931 - 40314116
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  40313931 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 40314030  T
Q  726 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  40314031 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 40314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 612 - 787
Target Start/End: Complemental strand, 31482247 - 31482071
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||| | | |||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  31482247 agtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagaca 31482148  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 787  Q
      |||| ||||||||||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  31482147 gatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  343 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 24788400 - 24788302
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 24788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 97 - 293
Target Start/End: Original strand, 33417157 - 33417366
Alignment:
Q  97 gtttggatagcacactcccgcattgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttgga--------- 187  Q
    |||||||||||||||||| || | ||||| ||| |||||||||||| ||||||||| |||||||| |  |||||||||||||  |||||||             
T  33417157 gtttggatagcacactcctgcctggtgctatgcctcaacctatcactacttaccacgcctctctatccgcagacaaacttcctattttggaacttgtcaa 33417256  T
Q  188 ---accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgat 283  Q
       ||||||||||| || |  ||| |||||||||| || ||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  ||||||||     
T  33417257 cacaccagtgcatgatggagttgtctgttcttctgcagatcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgag 33417356  T
Q  284 tctagccttg 293  Q
    ||||||||||    
T  33417357 tctagccttg 33417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 766
Target Start/End: Original strand, 39884696 - 39884749
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 766  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  365 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 434  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacata 379  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 27286203 - 27286382
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaatttt-aatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  ||||||| |||||||| |||||||| ||||||| ||||||| ||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttcatatgttccaccatagaca 27286302  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27286303 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 612 - 790
Target Start/End: Complemental strand, 52385992 - 52385813
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||| || ||||||| ||| ||||| ||| || | ||||||| ||||||| ||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttcatatgttccaccatagaca 52385893  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||||||||| |||||| | ||||||||||  ||| ||| ||| ||||||||||||  | |||||||||||||||||||    
T  52385892 agtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttctt 52385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 628 - 810
Target Start/End: Original strand, 39241614 - 39241793
Alignment:
Q  628 caatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 726  Q
    |||||| |||| |||| || ||||||||||||| | |||||||| ||||||| | |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  39241614 caatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatc 39241712  T
Q  727 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 810  Q
    |||| |||||||||||| ||   | | | ||||||||||||  |||||||||||||||||||||||| |  |||||| ||||||    
T  39241713 ttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttcttctaattacaattctctctcc 39241793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 12981521 - 12981619
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 12981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 45348344 - 45348246
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 361 - 434
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  361 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 434  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 720 - 789
Target Start/End: Complemental strand, 45325704 - 45325635
Alignment:
Q  720 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttct 789  Q
    ||||||||||| ||||||||||| || |||| ||| |||||||||||   ||||||||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 17937621 - 17937709
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 298  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937621 ttcttctgcagctcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 17867409 - 17867361
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||  |||| ||||||||||||||||||||||||| |||||||||    
T  17867409 ttcttctacagcttagagaagtgtggacattttacaaaatttttggggg 17867361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 43403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 7e-42; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 14096295 - 14096474
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 14096394  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||||||||| ||||||||  |||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  14096395 agtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 14096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 700 - 821
Target Start/End: Complemental strand, 18977200 - 18977078
Alignment:
Q  700 caccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacca 799  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||  ||||||||||| | ||||||||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  800 attcgctctcct-tttatttccc 821  Q
    |||  ||||||| ||||||||||    
T  18977100 attatctctcctctttatttccc 18977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 18559952 - 18559840
Alignment:
Q  188 accagtgcatgctgcaaatgtttgttcttctgaagctcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattct 286  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || |||    
T  18559952 accagtgcatactgcaactgtttgttcttctgaagttcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatct 18559853  T
Q  287 agccttgtctgtc 299  Q
    ||| |||||||||    
T  18559852 agctttgtctgtc 18559840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 713 - 814
Target Start/End: Original strand, 37078947 - 37079048
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 812  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  813 tt 814  Q
    ||    
T  37079047 tt 37079048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 15330735 - 15330833
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 15330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 37261773 - 37261675
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 37261675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 14810191 - 14810093
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 14810093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 16429864 - 16429962
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcct 16429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 17690604 - 17690702
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 17690702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 365 - 430
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  365 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 784  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 21950109 - 21950067
Alignment:
Q  218 tgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21950109 tgaagctcagagaagtgtggacattttacaaaagttttggggg 21950067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 766
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 766  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 434  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 662
Target Start/End: Complemental strand, 18977264 - 18977214
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag 662  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  18977264 agtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtag 18977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  381 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 40275205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  365 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 434  Q
    |||||| |||||| | |||| ||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 14555887 - 14555960
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgact 432  Q
    |||||||| ||| | || ||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||    
T  14555887 agcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 14555960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 612 - 790
Target Start/End: Original strand, 19436711 - 19436890
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| ||||| |||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 19436810  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 790  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| ||||||||||||  | | |||||||||||||||||    
T  19436811 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttctt 19436890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 612 - 786
Target Start/End: Complemental strand, 29834123 - 29833948
Alignment:
Q  612 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 710  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||| || ||||| | ||||||||| |||||||| ||||||| ||||||| ||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttcatatgttccaccatagaca 29834024  T
Q  711 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttt 786  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| |||||||||||   | ||| |||||||||||    
T  29834023 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatttt 29833948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 713 - 814
Target Start/End: Original strand, 47327942 - 47328043
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 812  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  813 tt 814  Q
    ||    
T  47328042 tt 47328043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 626 - 747
Target Start/End: Original strand, 29258440 - 29258562
Alignment:
Q  626 gccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||||||||||||| ||    
T  29258440 gccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataat 29258539  T
Q  726 c-ttaaaggttagatttacttgg 747  Q
    | |||| ||||||||||||||||    
T  29258540 ctttaacggttagatttacttgg 29258562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 38835898 - 38836075
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||| || ||||||| ||||  |||||| |  |   ||||||| |||||  ||||||||||    
T  38835898 ttgtgctatgcctcagcctatcactacttaccacacctctctatcaacagacaagcttcttgttttgaaggctctagtgcatactgcagttgtttgttct 38835997  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 294  Q
    |||| ||||||||  ||||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  38835998 tctgcagctcaga--agtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagccttgt 38836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 45972423 - 45972521
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45972521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 713 - 797
Target Start/End: Original strand, 29243380 - 29243462
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 797  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 29243462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 720 - 793
Target Start/End: Original strand, 6442633 - 6442706
Alignment:
Q  720 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 793  Q
    |||||||||||  |||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 6442706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 425  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 724 - 793
Target Start/End: Original strand, 34094118 - 34094187
Alignment:
Q  724 atcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 793  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 34094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 431  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  361 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 424  Q
    |||||||||| |||||||  ||||||| || |||||||||||| | ||||| ||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 119 - 299
Target Start/End: Original strand, 40715703 - 40715887
Alignment:
Q  119 ttgtgctctgcatcaacctatcacaacttaccacacctctctaacatcagacaaacttccggttttggaacc---agtgcatgctgcaaatgtttgttct 215  Q
    ||||||| ||| ||||||||| || ||||||||| |||||||| || |||| || |||||  ||||| | ||   ||||||| |||||  || || ||||    
T  40715703 ttgtgctatgcctcaacctataactacttaccactcctctctatcagcagataagcttcctattttgaagcctccagtgcatactgcagttgctttttct 40715802  T
Q  216 tctgaagctcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgtctgtc 299  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| ||||    
T  40715803 tttgaagctcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgtttgtc 40715887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 627 - 787
Target Start/End: Complemental strand, 13802843 - 13802682
Alignment:
Q  627 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 725  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  13802843 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 13802744  T
Q  726 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 787  Q
    ||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  13802743 cttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Original strand, 531684 - 531782
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    |||||||||| || |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 430
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 430  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 713 - 797
Target Start/End: Complemental strand, 30945527 - 30945445
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 797  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 30945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 663 - 793
Target Start/End: Original strand, 23613574 - 23613705
Alignment:
Q  663 gacaaattttaatatggaccacttgctccatatgtcccaccatggacaa-gtttatttcatgatcttaaaggttagatttacttggtctatatattattg 761  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| ||  ||| ||| | |||||||| ||||||||||  |||||||  ||  |||||    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  762 tggtacgtcatctacacatgatttttcttcta 793  Q
    ||||||  | |||||||||||||||| |||||    
T  23613674 tggtacagcctctacacatgatttttgttcta 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 784
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 784  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 6596378 - 6596452
Alignment:
Q  221 agctcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 294  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596378 agctcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 19168178 - 19168247
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  ||||||| ||| | ||| ||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaaaatttgt 19168247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 40715928 - 40716013
Alignment:
Q  340 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 425  Q
    ||||||| ||||||| || | |||||||||| |||||||| |||||||||  ||||| | ||   ||||||| |||||||||||||    
T  40715928 tagacaaatttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 713 - 811
Target Start/End: Complemental strand, 30783 - 30685
Alignment:
Q  713 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 811  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 30685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 21848 - 21800
Alignment:
Q  212 ttcttctgaagctcagagaagtgtggacattttacaaaagttttggggg 260  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  21848 ttcttctgcagctcagaaaagtgtggacattttacaaaagttttggggg 21800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 362 - 428
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  362 acaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 18923 - 18991
Alignment:
Q  359 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 428  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||  ||||||| ||||| ||||||||||    
T  18923 agcacaattattgagcacatacaaactcgttct-aaaagggtgtcatcaaaagcaatcccaaatatttgt 18991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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