View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208-INSERTION-20 (Length: 156)
Name: NF0208-INSERTION-20
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-INSERTION-20 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 149; Significance: 5e-79; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 23588 - 23440
Alignment:
| Q |
8 |
ccaaatgctttatctcagcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacct |
107 |
Q |
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| T |
23588 |
ccaaatgctttatctcagcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacct |
23489 |
T |
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| Q |
108 |
cttcttctcatattgtaaaacatcattcaccagcttactagctgtattc |
156 |
Q |
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| T |
23488 |
cttcttctcatattgtaaaacatcattcaccagcttactagctgtattc |
23440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 3879676 - 3879528
Alignment:
| Q |
8 |
ccaaatgctttatctcagcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879676 |
ccaaatgctttatctcagcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacct |
3879577 |
T |
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| Q |
108 |
cttcttctcatattgtaaaacatcattcaccagcttactagctgtattc |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879576 |
cttcttctcatattgtaaaacatcattcaccagcttactagctgtattc |
3879528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 39319994 - 39320142
Alignment:
| Q |
8 |
ccaaatgctttatctcagcaccagagccaaacatagccacgggtgatgaggaaccaaacccatgatacaaacatttttccatacattcagtgtgtaacct |
107 |
Q |
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||||||||||||||||||||||||| ||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39319994 |
ccaaatgctttatctcagcaccagacccaaacaatgctataggtgatgaggaacctgacccatgatacaaacatttttccatacattcagtgcgtaacct |
39320093 |
T |
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| Q |
108 |
cttcttctcatattgtaaaacatcattcaccagcttactagctgtattc |
156 |
Q |
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||| |||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
39320094 |
ctttttctcatattctaaaacatcattcaccatcatactagctgtattc |
39320142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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