View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0208-Insertion-1 (Length: 628)

Name: NF0208-Insertion-1
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0208-Insertion-1
NF0208-Insertion-1
[»] chr6 (1 HSPs)
chr6 (24-622)||(20694198-20694781)
[»] chr8 (7 HSPs)
chr8 (423-531)||(8238734-8238842)
chr8 (410-499)||(10340235-10340324)
chr8 (395-480)||(37616263-37616348)
chr8 (410-500)||(38924413-38924503)
chr8 (410-497)||(38202007-38202094)
chr8 (411-524)||(29204594-29204707)
chr8 (426-494)||(34273126-34273194)
[»] chr7 (15 HSPs)
chr7 (389-582)||(101249-101442)
chr7 (360-582)||(6394465-6394687)
chr7 (437-503)||(25690728-25690794)
chr7 (426-498)||(35851960-35852032)
chr7 (455-571)||(41432936-41433052)
chr7 (489-584)||(101212-101306)
chr7 (437-503)||(45773210-45773276)
chr7 (393-590)||(30357821-30358018)
chr7 (437-501)||(11754693-11754757)
chr7 (410-494)||(48078598-48078682)
chr7 (413-480)||(5815096-5815163)
chr7 (387-499)||(22600659-22600771)
chr7 (411-503)||(41195703-41195795)
chr7 (437-495)||(16780770-16780828)
chr7 (516-596)||(31726551-31726631)
[»] chr4 (7 HSPs)
chr4 (394-503)||(40423278-40423387)
chr4 (387-530)||(24672674-24672817)
chr4 (408-590)||(37761714-37761896)
chr4 (391-493)||(24672978-24673080)
chr4 (440-499)||(79525-79584)
chr4 (384-480)||(24671009-24671105)
chr4 (440-500)||(25844268-25844328)
[»] chr2 (4 HSPs)
chr2 (423-529)||(4422806-4422912)
chr2 (424-480)||(15404950-15405006)
chr2 (393-474)||(37028182-37028263)
chr2 (437-501)||(21488860-21488924)
[»] chr3 (11 HSPs)
chr3 (390-503)||(12767287-12767400)
chr3 (438-535)||(27177301-27177397)
chr3 (439-582)||(6588248-6588391)
chr3 (437-500)||(25258076-25258139)
chr3 (423-503)||(52205029-52205107)
chr3 (393-480)||(40413395-40413482)
chr3 (364-446)||(6588259-6588341)
chr3 (392-453)||(15513428-15513489)
chr3 (460-497)||(28480224-28480261)
chr3 (460-497)||(28509407-28509444)
chr3 (390-446)||(25543544-25543600)
[»] chr1 (6 HSPs)
chr1 (458-575)||(2930280-2930395)
chr1 (392-523)||(25484937-25485068)
chr1 (360-479)||(34123103-34123222)
chr1 (361-402)||(16238726-16238767)
chr1 (408-480)||(16238819-16238891)
chr1 (360-446)||(39902212-39902295)
[»] chr5 (5 HSPs)
chr5 (410-480)||(9945590-9945659)
chr5 (424-484)||(33270031-33270091)
chr5 (423-502)||(35895031-35895110)
chr5 (392-453)||(9962968-9963029)
chr5 (411-471)||(23311802-23311862)
[»] scaffold0110 (1 HSPs)
scaffold0110 (392-500)||(31358-31466)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 622
Target Start/End: Original strand, 20694198 - 20694781
Alignment:
Q  24 atgtacaaggacatttaattactttatcaacctctttttgatacaatctttctatatttttgtaagttctaaccgagtgttagttgcattaatgtggacc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694198 atgtacaaggacatttaattactttatcaacctctttttgatacaatctttctatatttttgtaagttctaaccgagtgttagttgcattaatgtggacc 20694297  T
Q  124 tatgatttgatttaccaacttgattattgtgtttctttacaagattaaaaggatatatcatattgagttgatggtgattttagccttgtcggattaatca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  20694298 tatgatttgatttaccaacttgattattgtgtttctttacaagattaaaaggatatatcatattgagttgatgatgattttagcctcgtcagattaatca 20694397  T
Q  224 ccgactaacttacataacttgaagatggtacatgaaaaagccacaattattgttcaattattccaatgattttatacaatacctgtgtttattgaaatgt 323  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20694398 ctgactaacttacataacttgaagatggtacatgaaaaagccacaattattgttcaattattccaatgattttatacaatacctgtgtttattgaattgt 20694497  T
Q  324 ttttatatgcnnnnnnnnttgtaaattacttctcttttttaaaattgtccactcctttgatctagcgggagttaactcacctttgacatttttcaacgat 423  Q
    |||||||||         ||| | ||||||||||||||| || ||||| || ||| || ||||||||| | |||||||||  |  |||||||||| ||||    
T  20694498 ttttatatg--aaaaaaattgaacattacttctctttttcaagattgttcattcccttcatctagcggaaattaactcacgctcaacatttttcagcgat 20694595  T
Q  424 agttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaa 523  Q
    |||||||||||  || |||||||| ||||||||||  | |||||||||||||||||||||              ||||||   ||||||||  |||||||    
T  20694596 agttaactcacggtggcacttttaagattggttgactcaacttaaaaagtgattgaatcg--------------agcgtgagttaactaccgttgaaaaa 20694681  T
Q  524 taccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaaaaacaatt-atcaaaaataattgtgcatggtcggtccactt 622  Q
    | ||||||||||||||||||||| | ||||||||||||| |||||||| ||| | ||||  |||||| |  ||||| |||||||||||||||||||||||    
T  20694682 tgccgagcataagataacttccgctagatcaagggaatgagcaattttaaaatgaagaagtacaattaaaaaaaaaaaattgtgcatggtcggtccactt 20694781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 423 - 531
Target Start/End: Complemental strand, 8238842 - 8238734
Alignment:
Q  423 tagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaa 522  Q
    |||||||||||||||  |||||||| ||| ||||||||||||| ||||||||||||||  || ||||||||||||||||||   |||||||| |||||||    
T  8238842 tagttaactcacaatagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaa 8238743  T
Q  523 ataccgagc 531  Q
    ||| |||||    
T  8238742 atatcgagc 8238734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 10340324 - 10340235
Alignment:
Q  410 catttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcag 499  Q
    ||||||||||||  |||||||||||  ||||||||||| ||| ||  || || ||||||||| |||||||||||| ||||||||||||||    
T  10340324 catttttcaacgtgagttaactcacgctgacacttttaagatcggccgacccaacttaaaaaatgattgaatcgatctaaaaagtgtcag 10340235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 37616263 - 37616348
Alignment:
Q  395 ttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    ||||||||| || ||||||||||| ||   ||||||||||  ||||||||||| ||||||||||||| ||||||||  ||||||||    
T  37616263 ttaactcacgttcgacatttttcagcgtgggttaactcacgctgacacttttaagattggttgatccaacttaaaagatgattgaa 37616348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 500
Target Start/End: Complemental strand, 38924503 - 38924413
Alignment:
Q  410 catttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagc 500  Q
    ||||||||| ||  |||||||||||  || |||||||| |||  ||||| ||||||||||||||||||||| ||| || ||||||| ||||    
T  38924503 catttttcagcggaagttaactcacgctgtcacttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaaagtgccagc 38924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 497
Target Start/End: Complemental strand, 38202094 - 38202007
Alignment:
Q  410 catttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtc 497  Q
    |||||||||||| |||||||||  || ||||| |||||  |||| |||| |||| ||||||||| |||||| ||| || |||||||||    
T  38202094 catttttcaacggtagttaactgccactgacaattttaacattgattgaaccgatttaaaaagtaattgaaccgatcttaaaagtgtc 38202007  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 524
Target Start/End: Complemental strand, 29204707 - 29204594
Alignment:
Q  411 atttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaac 510  Q
    |||||||| ||  |||||||| ||  || |||||||| |||  ||||||||||||||||||||||||||| |||  | ||||||   |||||| | ||||    
T  29204707 atttttcagcgtaagttaacttacgctgtcacttttaagatcagttgatccgacttaaaaagtgattgaaccgattttaaaagtactagcgtgaattaac 29204608  T
Q  511 taccactgaaaaat 524  Q
    |  |||||||||||    
T  29204607 tcacactgaaaaat 29204594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 34273126 - 34273194
Alignment:
Q  426 ttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagt 494  Q
    |||||||||  |||||||||||  || |||||| |||||||||| |||||||||| ||| || ||||||    
T  34273126 ttaactcacgctgacacttttaaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaaagt 34273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 389 - 582
Target Start/End: Original strand, 101249 - 101442
Alignment:
Q  389 cgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagcta 488  Q
    ||||||||||||||   | | ||||||||| || ||||||||||||  ||||||||||| ||| |||||| | |||||||||||||||||||  || |||    
T  101249 cgggagttaactcatgctcggcatttttcagcggtagttaactcacgctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgatcta 101348  T
Q  489 aaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaa 582  Q
    |||||||  ||| ||   |||||||| |||||||||  ||||||| || ||||| ||| | | |||||| ||||  ||||||||||| ||||||    
T  101349 aaaagtgctagcatgagttaactaccgctgaaaaatgtcgagcatgagttaactcccgttaggtcaaggaaatgaacaattttgaaagggagaa 101442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 582
Target Start/End: Original strand, 6394465 - 6394687
Alignment:
Q  360 ttttaaaattgtccactcctttgatctagcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgat 459  Q
    |||||||||||| || |||||||||||||| |||||||||||||  | | ||||| ||  |||||||||||||||  ||||| ||||| |||   ||||     
T  6394465 ttttaaaattgttcattcctttgatctagcaggagttaactcacgctcggcatttgtctgcgatagttaactcacgctgacatttttaagatcaattgac 6394564  T
Q  460 ccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatcaaggga 559  Q
    ||  ||||||| ||||||||| ||| |||| | |||| ||||||   |||||||| || ||||||  | ||| | || ||||||||| |||| |||| ||    
T  6394565 ccatcttaaaaggtgattgaaccgatctaatacgtgttagcgtgagttaactaccgctaaaaaatgtcaagcgtgagttaacttccgttggagcaagaga 6394664  T
Q  560 atgggcaattttgaaaaggagaa 582  Q
    ||   ||||||| ||||||||||    
T  6394665 ataaacaattttaaaaaggagaa 6394687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 25690794 - 25690728
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtg 503  Q
    ||||||||||| ||| |||||| ||| ||||||||||||||||| ||| ||||||||||||||||||    
T  25690794 tgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtg 25690728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 35851960 - 35852032
Alignment:
Q  426 ttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtca 498  Q
    |||||||||| ||||||||||| ||| |||||| |||||||| |||||||||||| ||| || ||||||||||    
T  35851960 ttaactcacactgacacttttaagatcggttgaaccgacttagaaagtgattgaaccgatcttaaaagtgtca 35852032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 455 - 571
Target Start/End: Original strand, 41432936 - 41433052
Alignment:
Q  455 ttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatca 554  Q
    |||||||||||||||||||||||||| ||| ||||||||||| || |||   ||| |||||||||||||||  |||| | || ||||| |||  | ||||    
T  41432936 ttgatccgacttaaaaagtgattgaaccgatctaaaaagtgttagtgtgagttaaataccactgaaaaatattgagcgtgagttaactcccgccgaatca 41433035  T
Q  555 agggaatgggcaatttt 571  Q
    || ||||| ||||||||    
T  41433036 agcgaatgagcaatttt 41433052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 584
Target Start/End: Complemental strand, 101306 - 101212
Alignment:
Q  489 aaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaaaa 584  Q
    |||||||||||||||   |||||||| ||||||||| |||||||| || ||||| ||| ||| ||||||| ||| |||||||||||| ||||||||    
T  101306 aaaagtgtcagcgtgagttaactaccgctgaaaaatgccgagcatgagttaactcccgttgggtcaaggg-atgagcaattttgaaagggagaaaa 101212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 503
Target Start/End: Complemental strand, 45773276 - 45773210
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtg 503  Q
    |||| |||||| |||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||    
T  45773276 tgacgcttttaagattggttgaaccggcgtaaaaagtgattgaaccgatctaaaaagtgtcagcgtg 45773210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 590
Target Start/End: Original strand, 30357821 - 30358018
Alignment:
Q  393 agttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaa 492  Q
    |||||||||||  | ||||||||||| || ||||||||||||| ||| | ||||| |||  ||||| | ||| |||||||||| |||||| | |||||||    
T  30357821 agttaactcacgctcgacatttttcagcggtagttaactcacattgatatttttaagatcagttgacctgacataaaaagtgagtgaatcaatctaaaaa 30357920  T
Q  493 gtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaaaaacaatt 590  Q
    ||||| | ||| | || |||||  |||||||| |||| | | |  ||||  ||| ||||| |||||||||   |||||| ||| |||||| |||||||    
T  30357921 gtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtgaattaacccccgttggattaagggaatgaaaaattttaaaagggagaagaacaatt 30358018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 11754693 - 11754757
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcg 501  Q
    ||||||||||| |||||||||| ||||  ||||||||||||||| ||| || |||||||||||||    
T  11754693 tgacacttttaagattggttgaaccgagataaaaagtgattgaaccgatcttaaaagtgtcagcg 11754757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 48078682 - 48078598
Alignment:
Q  410 catttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagt 494  Q
    ||||||||||| | ||||||||| |  || |||||||| ||| |||||| |||||||||||||||||||||| || || ||||||    
T  48078682 catttttcaactagagttaactctcgttggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 48078598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 413 - 480
Target Start/End: Original strand, 5815096 - 5815163
Alignment:
Q  413 ttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    ||||||||| |||| |||||||| || |||||||| ||| |||||| | |||||||||||||||||||    
T  5815096 ttttcaacggtagtaaactcacattggcacttttaagatcggttgacctgacttaaaaagtgattgaa 5815163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 499
Target Start/End: Complemental strand, 22600771 - 22600659
Alignment:
Q  387 agcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagc 486  Q
    ||||||||||||||| | || || ||||||||  |  ||||||||||   || |||| ||| |||||||||| ||| |||||||||| |||||||||| |    
T  22600771 agcgggagttaactcccgttcgatatttttcagtgtaagttaactcatgttggcactattaagattggttgaaccggcttaaaaagtaattgaatcgatc 22600672  T
Q  487 taaaaagtgtcag 499  Q
    | |||| ||||||    
T  22600671 ttaaaaatgtcag 22600659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 411 - 503
Target Start/End: Complemental strand, 41195795 - 41195703
Alignment:
Q  411 atttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtg 503  Q
    |||||||| ||  ||||||||||   ||||||||||| |||  ||||| ||  ||||||||||||||||||| | || |||||||||||||||    
T  41195795 atttttcagcggaagttaactcaagttgacacttttaagatcagttgaaccagcttaaaaagtgattgaatcaaccttaaaagtgtcagcgtg 41195703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 16780770 - 16780828
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtg 495  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||| ||| || |||||||    
T  16780770 tgacacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtg 16780828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 596
Target Start/End: Complemental strand, 31726631 - 31726551
Alignment:
Q  516 ctgaaaaataccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaaaaacaattatcaaa 596  Q
    ||||||||| | |||||| || |||||  ||||| || |||||||||||||||||| | | |||||| ||||||| |||||    
T  31726631 ctgaaaaatgctgagcatgagttaactcacgatgaattaagggaatgggcaattttaagagggagaagaacaattttcaaa 31726551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 503
Target Start/End: Original strand, 40423278 - 40423387
Alignment:
Q  394 gttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaag 493  Q
    ||||||||||  ||||||||||||||||  ||||||||||   ||||||||||| |||| ||||| ||||||||||||||||||||| ||| || ||||     
T  40423278 gttaactcacgcttgacatttttcaacggaagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaat 40423377  T
Q  494 tgtcagcgtg 503  Q
    ||||||||||    
T  40423378 tgtcagcgtg 40423387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 530
Target Start/End: Original strand, 24672674 - 24672817
Alignment:
Q  387 agcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagc 486  Q
    |||||||||| ||||||  | || |||||||| | | |||||||||||  ||||||||||   || |||| ||||||||||||||||||||||||||| |    
T  24672674 agcgggagtttactcacgctcgatatttttcagcaacagttaactcacgttgacactttttttatcggtttatccgacttaaaaagtgattgaatcgatc 24672773  T
Q  487 taaaaagtgtcagcgtgcactaactaccactgaaaaataccgag 530  Q
    |||| |||| || ||||   |||||||| ||||||||| |||||    
T  24672774 taaatagtgccaacgtgagttaactaccgctgaaaaatgccgag 24672817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 590
Target Start/End: Complemental strand, 37761896 - 37761714
Alignment:
Q  408 gacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcact 507  Q
    ||||||||||| |  ||| ||||||||  ||||||||||| || ||||||| || |||||||| | |||||||  || ||||||| |||||  |||   |    
T  37761896 gacatttttcagcagtagctaactcacgctgacacttttaagaatggttgacccaacttaaaatgcgattgaactgatctaaaaaatgtcaatgtgagtt 37761797  T
Q  508 aactaccactgaaaaataccgagcataagataacttccgatggatcaagggaatgggcaattttgaaaaggagaaaaacaatt 590  Q
    ||||||| |||||||||   || | | || ||||||||| || |||||||||||| |||||||||||| ||| || |||||||    
T  37761796 aactaccgctgaaaaatgttgaacgtgagttaacttccgttgtatcaagggaatgagcaattttgaaagggaaaagaacaatt 37761714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 493
Target Start/End: Original strand, 24672978 - 24673080
Alignment:
Q  391 ggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaa 490  Q
    |||||||||||||  |||  |||||| | || ||||||||||||  || |||||||| |||||||||| ||||| |||||||||||||||  || |||||    
T  24672978 ggagttaactcacgcttggtattttttagcggtagttaactcacgttggcacttttaagattggttgacccgacataaaaagtgattgaactgatctaaa 24673077  T
Q  491 aag 493  Q
    |||    
T  24673078 aag 24673080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 79525 - 79584
Alignment:
Q  440 cacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcag 499  Q
    |||||||| |||  ||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  79525 cacttttaagatcagttgacccgacttaaaaagtgattgaaccgatctaaaaagtgtcag 79584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 480
Target Start/End: Original strand, 24671009 - 24671105
Alignment:
Q  384 tctagcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    ||||| ||||||||||||||  |  |||||||| | || ||| ||||||||  ||  ||||||  |||||||||| |||||| ||||||||||||||    
T  24671009 tctagtgggagttaactcacgctcaacattttttagcggtagataactcacgctggtactttttagattggttgaaccgactaaaaaagtgattgaa 24671105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 25844268 - 25844328
Alignment:
Q  440 cacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagc 500  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| | || ||||||||||||    
T  25844268 cacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtcagc 25844328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 423 - 529
Target Start/End: Original strand, 4422806 - 4422912
Alignment:
Q  423 tagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaa 522  Q
    ||||||||| |||  |||||||||| ||| ||||||| |||||||||||||||||||  ||| |||||||||| | |||||   |||||| |||||||||    
T  4422806 tagttaacttacaccgacacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaactatcactgaaaa 4422905  T
Q  523 ataccga 529  Q
    |||||||    
T  4422906 ataccga 4422912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 15405006 - 15404950
Alignment:
Q  424 agttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    |||||||||||  |||||||||||  || |||||| |||||||||||||||||||||    
T  15405006 agttaactcacgttgacacttttaaaatcggttgacccgacttaaaaagtgattgaa 15404950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 474
Target Start/End: Complemental strand, 37028263 - 37028182
Alignment:
Q  393 agttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtg 474  Q
    ||||||||||| || | ||||||||| || |||||||| |||  |||||||||||  | ||||||| |||| ||||||||||    
T  37028263 agttaactcacgttcggcatttttcagcggtagttaacacacgttgacacttttaaaaatggttgacccgatttaaaaagtg 37028182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 501
Target Start/End: Complemental strand, 21488924 - 21488860
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcg 501  Q
    ||||||||||| ||| |||||| | |||||||||| |||||||| ||| || |||||||| ||||    
T  21488924 tgacacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgttagcg 21488860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 12767287 - 12767400
Alignment:
Q  390 gggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaa 489  Q
    |||||||||||||| ||   ||||||||| ||  | ||||| |||  |||||||| || ||| |||||||||||||||||||||||||||| ||| || |    
T  12767287 gggagttaactcacgttccgcatttttcagcgtgaattaacccacgctgacacttctaagatcggttgatccgacttaaaaagtgattgaaacgatctta 12767386  T
Q  490 aaagtgtcagcgtg 503  Q
    ||||||| ||||||    
T  12767387 aaagtgttagcgtg 12767400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 535
Target Start/End: Complemental strand, 27177397 - 27177301
Alignment:
Q  438 gacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataa 535  Q
    |||||||||| ||| |||||| || ||||||||| |||||||| ||| |||||||||||||| ||| | | ||||||||||||||||  |||||||||    
T  27177397 gacacttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagtgtcagtgtg-agttactaccactgaaaaatgtcgagcataa 27177301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 582
Target Start/End: Complemental strand, 6588391 - 6588248
Alignment:
Q  439 acacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagat 538  Q
    ||||||||| ||| |||||| |||||||||||  || ||||| ||| | ||||||||||||||||   |||||||  ||||||||| || ||| | || |    
T  6588391 acacttttaagatcggttgacccgacttaaaacatgtttgaaccgatcaaaaaagtgtcagcgtgagttaactactgctgaaaaatgccaagcgtgagtt 6588292  T
Q  539 aacttccgatggatcaagggaatgggcaattttgaaaaggagaa 582  Q
    |||| ||| | | |||||||||||  ||||||||||| ||||||    
T  6588291 aactaccgctaggtcaagggaatgaacaattttgaaagggagaa 6588248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 25258076 - 25258139
Alignment:
Q  437 tgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagc 500  Q
    ||||||||||| ||| |||||| |||||||||||||||||||||  || || ||||||||||||    
T  25258076 tgacacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcagc 25258139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 52205029 - 52205107
Alignment:
Q  423 tagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtg 503  Q
    |||||||||||   ||||||||||| ||| |||||| ||||||| ||||||||||||| ||| ||||||||| ||||||||    
T  52205029 tagttaactcatgctgacacttttaagatcggttgacccgactt-aaaagtgattgaa-cgatctaaaaagtatcagcgtg 52205107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 40413395 - 40413482
Alignment:
Q  393 agttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    ||||||||||| || |||||||||||| | ||||||| | ||  ||  | ||||| ||| |||||| |||||||||||||||||||||    
T  40413395 agttaactcacgttcgacatttttcaatggtagttaaattacgttggtaattttaagatcggttgacccgacttaaaaagtgattgaa 40413482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 6588259 - 6588341
Alignment:
Q  364 aaaattgtccactcctttgatctagcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacactttt 446  Q
    |||||||| || ||| |||| ||||||| |||||||||||  ||| ||||||||| |  ||||||||||||  ||||||||||    
T  6588259 aaaattgttcattcccttgacctagcggtagttaactcacgcttggcatttttcagcagtagttaactcacgctgacactttt 6588341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 15513428 - 15513489
Alignment:
Q  392 gagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattg 453  Q
    |||||||||||| || ||||||||||||||  | ||||||||||  |||||||||| |||||    
T  15513428 gagttaactcacgttcgacatttttcaacgtgaattaactcacaccgacacttttaagattg 15513489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 28480224 - 28480261
Alignment:
Q  460 ccgacttaaaaagtgattgaatcgagctaaaaagtgtc 497  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  28480224 ccgatttaaaaagtgattgaatcgatctaaaaagtgtc 28480261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 28509407 - 28509444
Alignment:
Q  460 ccgacttaaaaagtgattgaatcgagctaaaaagtgtc 497  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  28509407 ccgatttaaaaagtgattgaatcgatctaaaaagtgtc 28509444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 25543600 - 25543544
Alignment:
Q  390 gggagttaactcacctttgacatttttcaacgatagttaactcacaatgacactttt 446  Q
    |||||||||||||| || | ||||||||| || |||||||||||||  |||||||||    
T  25543600 gggagttaactcacgttcggcatttttcagcggtagttaactcacacggacactttt 25543544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 575
Target Start/End: Original strand, 2930280 - 2930395
Alignment:
Q  458 atccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgtgcactaactaccactgaaaaataccgagcataagataacttccgatggatcaagg 557  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| || | |||||| | |||||||||  ||||| | || | || || | ||| ||||||    
T  2930280 atccgacttaaaaagtgattgaaccgatctaaaaagtgtcagc-tgaattaactatcgctgaaaaatgtcgagcgtgagttgac-tctgctgggtcaagg 2930377  T
Q  558 gaatgggcaattttgaaa 575  Q
    ||||| ||||||||||||    
T  2930378 gaatgagcaattttgaaa 2930395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 523
Target Start/End: Complemental strand, 25485068 - 25484937
Alignment:
Q  392 gagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaa 491  Q
    |||||||||||| || |||||||| || ||  |||||||||||  || |||||||| ||| | ||||   | |||||||||||||||||| || || |||    
T  25485068 gagttaactcacgttcgacattttccagcgtgagttaactcacgctgccacttttaagatcgtttgaattggcttaaaaagtgattgaattgatcttaaa 25484969  T
Q  492 agtgtcagcgtgcactaactaccactgaaaaa 523  Q
    |||| ||||||  | |||||  ||||||||||    
T  25484968 agtgccagcgtaaattaactcacactgaaaaa 25484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 479
Target Start/End: Original strand, 34123103 - 34123222
Alignment:
Q  360 ttttaaaattgtccactcctttgatctagcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgat 459  Q
    |||||| ||||| || |||||| || || || | ||||||||||  | ||||||||||| ||  |||||||||||  |||||||||||  || ||||||     
T  34123103 ttttaacattgttcattcctttaatttaacgtgggttaactcacgctcgacatttttcagcggaagttaactcacgctgacacttttaaaatcggttgaa 34123202  T
Q  460 ccgacttaaaaagtgattga 479  Q
    ||  ||||||||||||||||    
T  34123203 ccagcttaaaaagtgattga 34123222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 16238726 - 16238767
Alignment:
Q  361 tttaaaattgtccactcctttgatctagcgggagttaactca 402  Q
    ||||||||||  ||||||||||||||| ||||||||||||||    
T  16238726 tttaaaattgctcactcctttgatctatcgggagttaactca 16238767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 16238891 - 16238819
Alignment:
Q  408 gacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    ||||||||||| || |||||||||||   ||| ||||||| ||||||||||  ||| ||||||| ||||||||    
T  16238891 gacatttttcagcggtagttaactcatgctgagacttttaagattggttgactcgatttaaaaaatgattgaa 16238819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 39902212 - 39902295
Alignment:
Q  360 ttttaaaattgtccactcctttgatctagcgggagttaactcacctttgacatttttcaacgatagttaactcacaatgacactttt 446  Q
    |||||||||||| |||||| || |||||| ||||||||| ||||  | |||||||||| ||||   |||||||||  ||||||||||    
T  39902212 ttttaaaattgttcactcccttcatctagtgggagttaattcactctcgacatttttcgacga---ttaactcacgctgacactttt 39902295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 9945659 - 9945590
Alignment:
Q  410 catttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaa 480  Q
    |||||||||||  ||||||||||||| ||||| ||||| ||| ||||||||| |||| |||||||||||||    
T  9945659 catttttcaacagtagttaactcacattgacatttttaagatcggttgatccaactt-aaaagtgattgaa 9945590  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 484
Target Start/End: Complemental strand, 33270091 - 33270031
Alignment:
Q  424 agttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcga 484  Q
    ||||||||||||   ||||||||| |||||||||| ||||||||||| |||||| ||||||    
T  33270091 agttaactcacacaaacacttttaagattggttgaaccgacttaaaatgtgattaaatcga 33270031  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 35895110 - 35895031
Alignment:
Q  423 tagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaaagtgtcagcgt 502  Q
    ||||||||||| | ||||| ||||| ||| | |||| |||||||||||||| ||| ||  || |||||||||||||||||    
T  35895110 tagttaactcatactgacatttttaagatcgattgacccgacttaaaaagtaatttaactgatctaaaaagtgtcagcgt 35895031  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 9963029 - 9962968
Alignment:
Q  392 gagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattg 453  Q
    ||||||||| || || | ||||||||| ||  |||||||||||||||||||||||| |||||    
T  9963029 gagttaacttacgttcggcatttttcagcgtaagttaactcacaatgacacttttaagattg 9962968  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 23311862 - 23311802
Alignment:
Q  411 atttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaa 471  Q
    |||||| ||||  |||||||||||  ||||||||||| |||||||||| | ||||||||||    
T  23311862 attttttaacgtaagttaactcacgttgacacttttaagattggttgaactgacttaaaaa 23311802  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 500
Target Start/End: Original strand, 31358 - 31466
Alignment:
Q  392 gagttaactcacctttgacatttttcaacgatagttaactcacaatgacacttttacgattggttgatccgacttaaaaagtgattgaatcgagctaaaa 491  Q
    |||||||||||| || | ||||||||| ||  ||||||||||||   ||| ||||| |||||||||| ||  ||||||||||||||||  ||| || |||    
T  31358 gagttaactcacgttcggcatttttcagcgtgagttaactcacacatacatttttaagattggttgaaccagcttaaaaagtgattgagccgatcttaaa 31457  T
Q  492 agtgtcagc 500  Q
    |||| ||||    
T  31458 agtgccagc 31466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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