View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208-Insertion-10 (Length: 490)
Name: NF0208-Insertion-10
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 49159136 - 49158682
Alignment:
| Q |
8 |
aacgtgagttggaaagaattgaaaaatatacaccaatgtccgaattatatgatgcatctcaaaattcacatg----------------------gaaatg |
85 |
Q |
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| T |
49159136 |
aacgtgagttggaaagaattgaaaaatatacaccaatgtccgaattatatgatgcatctcaaaattcacatgagtcatctattttaattaaagggaaatg |
49159037 |
T |
|
| Q |
86 |
ttaactagtgcttctgaatcatgagggttaaataataactttttacaagaatgagttagacttcaagactcgtgtaacattcatgaaaaaatttacattt |
185 |
Q |
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||||||||||| | | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49159036 |
ttaactagtgcctataaatcatgagttttaaataataactttttataagaatgagttagacttcaagactcgtgtaacattcatgaaaaaatttacattt |
49158937 |
T |
|
| Q |
186 |
accttccttcgaagaaatcaagaggactcaacatttgataagctgtgagataacatatcaatgcaacacgtcaacacttagttnnnnnnnngtatggaag |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
49158936 |
accttccttcgaagaaatcaagaggactcaacatttgataatttgtgagataacatatcaatgcaacgcgtcaacacttagttaaaaaaaagtatggaag |
49158837 |
T |
|
| Q |
286 |
tgattgatggactaacttgattaacattgtgcaatgtcaatgaaatttgaaaattgcgataaaggaggtgactgacttgaaacaagtggcaaagttggag |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
49158836 |
tgattgatggactaacttgattaacattgtgcaatgtcaatgaaatttgaaaactgcgataaaggaagtgactagcttgaaacaagtgtcaaagttggaa |
49158737 |
T |
|
| Q |
386 |
actaagttgagcattcaacttgtgttaagttttaaggtgatataaattgattttg |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49158736 |
actaagttgagcattcaacttgtgttaagttttaaggtgatataaattgattttg |
49158682 |
T |
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