View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0208-Insertion-11 (Length: 514)

Name: NF0208-Insertion-11
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0208-Insertion-11
NF0208-Insertion-11
[»] chr4 (15 HSPs)
chr4 (11-514)||(35969911-35970412)
chr4 (8-354)||(35974306-35974651)
chr4 (9-322)||(36634109-36634423)
chr4 (315-476)||(35970275-35970426)
chr4 (11-171)||(36663912-36664073)
chr4 (10-142)||(36641580-36641712)
chr4 (209-322)||(36641430-36641542)
chr4 (28-115)||(36632048-36632135)
chr4 (271-361)||(36911673-36911761)
chr4 (212-318)||(36663768-36663873)
chr4 (30-119)||(36661371-36661460)
chr4 (28-118)||(18361845-18361935)
chr4 (28-118)||(36600992-36601082)
chr4 (23-111)||(29678680-29678768)
chr4 (423-468)||(35974604-35974649)
[»] chr2 (1 HSPs)
chr2 (255-287)||(43429071-43429103)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 35969911 - 35970412
Alignment:
Q  11 ttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagt 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35969911 ttttctgcctacaggacgataaatcatccaatgaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagt 35970010  T
Q  111 tctcatatttcctacaagttacaatgtcttctttgcaagcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactac 210  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970011 tctcatatttcctacaagttacaatgtcttatttgcgggcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactac 35970110  T
Q  211 atgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970111 atgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgt 35970210  T
Q  311 gatatacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatatagtagtacttatttagtgaccatctctcagagtatgtctcg 410  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||||| |    
T  35970211 gatatacttatttagcgaccatctcagagtatgtctcggatactatattgttgtgatatagtagtacttatttagcaacca--tctcagagtatgtctgg 35970308  T
Q  411 gatactatattgttgtgatatacttatttagcgaccatctcagagtatggctcggatatatattgttgtgatatactcttagcgaccatcttagagtatg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970309 gatactatattgttgtgatatacttatttagcgaccatctcagagtatggctcggatatatattgttgtgatatactcttagcgaccatcttagagtatg 35970408  T
Q  511 tctc 514  Q
    ||||    
T  35970409 tctc 35970412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 35974306 - 35974651
Alignment:
Q  8 actttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaag 107  Q
    ||||| |||||||  ||||| |||||||||||||| |||| ||||||||||||||||||| || || |||||||||||||||||||||||||||||||||    
T  35974306 actttctctgcctttaggacaataaatcatccaatgaagataaggtggggaagcaccaacctatcaccgactctccacttctagataatgggcagtgaag 35974405  T
Q  108 agttctcatatttcctacaagttacaatgtcttctttgcaagcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttac 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||    
T  35974406 agttctcatatttcctacaagttacaatgtcttctttgcgagcctttcttttaagatattagataagtgactgaaaaa-aatcaattttcatgactttac 35974504  T
Q  208 tacatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatat 307  Q
    |||||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35974505 tacatgtttgatttgccaagcatttggtctatcgcatgatctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatat 35974604  T
Q  308 tgtgatatacttattcagcgaccatctcagagtatgtctcggatact 354  Q
    ||||||||| ||| | ||||||||||||||||||||||| |||||||    
T  35974605 tgtgatataattaattagcgaccatctcagagtatgtcttggatact 35974651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 322
Target Start/End: Complemental strand, 36634423 - 36634109
Alignment:
Q  9 ctttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaaga 108  Q
    ||||||||||||  |||| ||| ||| ||| ||| | || |||||||  |||||||||| ||||| | ||||||||||||||||||||| ||||||||||    
T  36634423 ctttttctgcctttaggaggattaataatcaaatgacgataaggtggataagcaccaacctaacaacaactctccacttctagataatgagcagtgaaga 36634324  T
Q  109 gttctcatatttcctacaagttacaatgtcttctttgcaagcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttact 208  Q
    ||||||||||||| ||||| |||| ||| ||||| ||  | |||||||||||||| || |||||||| ||||||||| | |||  ||  |||||||||||    
T  36634323 gttctcatatttcatacaaattacgatgccttctctgtgaacctttcttttaagacatcagataagtaactgaaaaata-tcagtttggctgactttact 36634225  T
Q  209 ---acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccat 305  Q
       ||||||||||||||  ||||| |||||  |||||| || |||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||||     
T  36634224 gaaacatgtttgatttgagaagcatttggttgatcacatgaactcttcatttgaggtccatgag-ttcatctaactggtagtctccaattttaaagccaa 36634126  T
Q  306 attgtgatatacttatt 322  Q
    ||||| |||||||||||    
T  36634125 attgtaatatacttatt 36634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 315 - 476
Target Start/End: Original strand, 35970275 - 35970426
Alignment:
Q  315 tacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatatagtagtacttatttagtgaccatctctcagagtatgtctcggata 414  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||      ||||||||| |||||||||  |||||||| ||||||||    
T  35970275 tacttatttagcaaccatctcagagtatgtctgggatactatattgttgtgatata------cttatttagcgaccatctc--agagtatggctcggata 35970366  T
Q  415 ctatattgttgtgatatacttatttagcgaccatctcagagtatggctcggata-tatattgt 476  Q
     |||||||||||||||||||   ||||||||||||| |||||||| ||| |||| ||||||||    
T  35970367 -tatattgttgtgatatactc--ttagcgaccatcttagagtatgtctcagatactatattgt 35970426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 36664073 - 36663912
Alignment:
Q  11 ttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagt 110  Q
    ||||||||||  |||| ||||||||||| ||| ||||  |||||| ||||| ||||| ||||| |||||| ||||||||||||||||| |||||||||||    
T  36664073 ttttctgcctttaggatgataaatcatcaaatgaagatgaggtggagaagcgccaacctaacaccgactcaccacttctagataatggccagtgaagagt 36663974  T
Q  111 tctcatatttcc-tacaagttacaatgtcttctttgcaagcctttcttttaagatattagat 171  Q
    ||||||||| || | |  ||||||||| || |||||  | ||||||||||||||||| ||||    
T  36663973 tctcatattgcctttcttgttacaatgcctcctttgtgaacctttcttttaagatatcagat 36663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 36641712 - 36641580
Alignment:
Q  10 tttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagag 109  Q
    |||||||||||  |||| |||||||||||   | |||| |||  || ||||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  36641712 tttttctgcctttaggatgataaatcatcagctgaagataagaaggagaagcaccaatctaacaccgactctccacttctagataatgggcagtgaagag 36641613  T
Q  110 ttctcatatttcctacaagttacaatgtcttct 142  Q
    |||||||||||| ||||| |||| ||| |||||    
T  36641612 ttctcatatttcatacaaattacgatgccttct 36641580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 209 - 322
Target Start/End: Complemental strand, 36641542 - 36641430
Alignment:
Q  209 acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatatt 308  Q
    |||||||||| ||| |||||| |||||| |||||| || |||||||||||||||||||||  || ||||| ||| |||||||||||||| |||||| |||    
T  36641542 acatgtttgacttgacaagcatttggtcgatcacatgaactcttcatttgaggtccatga-ctttatctaactggtagtctccaattttaaagccaaatt 36641444  T
Q  309 gtgatatacttatt 322  Q
    || |||||||||||    
T  36641443 gtaatatacttatt 36641430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 36632048 - 36632135
Alignment:
Q  28 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctca 115  Q
    ||||||||||| ||| |||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||||||||    
T  36632048 gataaatcatcaaatgaagataaggtggagaagcaccaacctaacatcaactcttcacttctagataatgtgcattgaagagttctca 36632135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 36911673 - 36911761
Alignment:
Q  271 ttcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgt 361  Q
    |||||||||||||| |||||||||||| |||||| |||||  |||||||||| ||| ||||||||||||||||| | |||||||| |||||    
T  36911673 ttcatctagctgatggtctccaattttaaagccaaattgt--tatacttatttagctaccatctcagagtatgtatgggatactaaattgt 36911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 36663873 - 36663768
Alignment:
Q  212 tgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtg 311  Q
    ||||||||||| ||||   ||||||||||||| ||  ||||||||||||||||||||| ||||||||| || |||||||||||||| |||| | |||||     
T  36663873 tgtttgatttgacaagtgtttggtctatcacatgagttcttcatttgaggtccatgag-ttcatctagttggtagtctccaattttaaagcgaaattgta 36663775  T
Q  312 atatact 318  Q
    |||||||    
T  36663774 atatact 36663768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 36661460 - 36661371
Alignment:
Q  30 taaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatt 119  Q
    ||||||||| ||| ||||  |||| | ||||| ||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  36661460 taaatcatcaaataaagatgaggtcgagaagcgccaacctaacacctactctccacttctagataatggccagtgaagagttctcatatt 36661371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 18361845 - 18361935
Alignment:
Q  28 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 118  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  18361845 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 18361935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 36601082 - 36600992
Alignment:
Q  28 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 118  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  36601082 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 36600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 29678680 - 29678768
Alignment:
Q  23 aggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagtt 111  Q
    |||| |||||||| || ||| |||| |||| || ||||||||||| |||||   |||||| |||||||||||| |||||||||||||||    
T  29678680 aggaagataaatcgtcaaatgaagataaggcggagaagcaccaacctaacacaaactctcaacttctagataaagggcagtgaagagtt 29678768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 35974604 - 35974649
Alignment:
Q  423 ttgtgatatacttatttagcgaccatctcagagtatggctcggata 468  Q
    |||||||||| ||| |||||||||||||||||||||| || |||||    
T  35974604 ttgtgatataattaattagcgaccatctcagagtatgtcttggata 35974649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 43429103 - 43429071
Alignment:
Q  255 tttgaggtccatgagattcatctagctgatagt 287  Q
    |||||||||||||||||||||||||||| ||||    
T  43429103 tttgaggtccatgagattcatctagctggtagt 43429071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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