View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208-Insertion-13 (Length: 548)
Name: NF0208-Insertion-13
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-Insertion-13 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 6 - 543
Target Start/End: Original strand, 5317693 - 5318230
Alignment:
| Q |
6 |
cacaatgcatattaagaaagacaaaaaggttaaattagccgatgtccaaacaagtaaacggacttgaccatcaattatgatagcctaaaacaaaatttgc |
105 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5317693 |
cacaatgcatactaagaaagacaaaaaggttaaattagccgatgtccaaacaagtaaacggacttgaccatcaactatgatagcctaaaacaaaatttgc |
5317792 |
T |
|
| Q |
106 |
attatttgccttcatccacgaaaagaaacgaagtttaattttatccaacaactaatgtatagaattttcagtattttttaatattatattattacgttca |
205 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5317793 |
attatttgccttcatccaccaaaagaaacgaagtttaactttatccaacaactaatgtatagaattttcagtattttt-aatattatattattacgttca |
5317891 |
T |
|
| Q |
206 |
ttccacacaactcaaacataaatgagtcaaataaattgtaaaaatgagcgccacactttcaaaccacatgtcagataaataaactgaataaaatgatttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
5317892 |
ttccacacaactcaaacataaatgagtcaaataaattgtaaaaatgagcgccacactttcaaaccacatgtcggataaataaactgaataaaatgatcta |
5317991 |
T |
|
| Q |
306 |
aaaa-caattgtggatctgctgacggaaacccaatccatgaacaaactaacgtcgaaagagaaccaaaattgctgcatgaaagaaaaaggtggtgagctg |
404 |
Q |
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|||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5317992 |
aaaaacagttgtggatttgccgacggaaacccaatccatgaacaaactaacgtcgaaagagaaccaaaattgctccatgaaagaaaaaggtggtgagctg |
5318091 |
T |
|
| Q |
405 |
attcaacacctccacaaccgaacacacaatagtaagtatctcgagagataatgtcgcaagacaccaagtttgcttttgttggtaatctgtcatgaagtag |
504 |
Q |
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| T |
5318092 |
attcaacacctccacaaccgaacacacaatagtaagtatctcgagagataatgtcgcaagacaccaagtttgcttttgttggtaatctgtcatgaagtag |
5318191 |
T |
|
| Q |
505 |
tctccacacagatatagaaatctttggaggaacttgtat |
543 |
Q |
| |
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||| |||||| ||||||||| |||||||||||||||||| |
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| T |
5318192 |
tcttcacacaaatatagaaacctttggaggaacttgtat |
5318230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 38 - 411
Target Start/End: Complemental strand, 6520856 - 6520483
Alignment:
| Q |
38 |
aattagccgatgtccaaacaagtaaacggacttgaccatcaattatgatagcctaaaacaaaatttgcattatttgccttcatccacgaaaagaaacgaa |
137 |
Q |
| |
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|||||| ||||| |||||||| |||| || || ||||| ||| |||||||| |||| |||||||| |||| ||||||||||||||| || || || || |
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| T |
6520856 |
aattagtcgatgcccaaacaaataaaagggctcgaccaccaactatgatagtctaagacaaaattaacattctttgccttcatccaccaataggaataaa |
6520757 |
T |
|
| Q |
138 |
gtttaattttatccaacaactaatgtatagaattttcagtattttttaatattatattattacgttcattccacacaactcaaacataaatgagtcaaat |
237 |
Q |
| |
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|||||| ||||||||| || | | |||| |||| || ||||||| |||||| ||||||||| |||||||||||| || |||| | ||| ||| |||| |
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| T |
6520756 |
gtttaactttatccaataagtgaagtatgcaattatctatatttttaaatattctattattacattcattccacacgacccaaatacaaaggagccaaac |
6520657 |
T |
|
| Q |
238 |
aaattgtaaaaatgagcgccacactttcaaaccacatgtcagataaataaactgaataaaatgatttgaaaacaattgtggatctgctgacggaaaccca |
337 |
Q |
| |
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| T |
6520656 |
aagttgtaaaaaggaatgtcatgctttcaaaccacttgccggataaataaacttaatgaaatgatatgaaaggaactgaggatccgccaccgaaaaacca |
6520557 |
T |
|
| Q |
338 |
atccatgaacaaactaacgtcgaaagagaaccaaaattgctgcatgaaagaaaaaggtggtgagctgattcaac |
411 |
Q |
| |
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| T |
6520556 |
atccaagaccgaactaacatccaaagagtaccaaaagtgatgcacgaaataaacaagtgttaagttgattcaac |
6520483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 14546003 - 14545818
Alignment:
| Q |
28 |
aaaaaggttaaattagccgatgtccaaacaagtaaacggacttgaccatcaattatgatagcctaaaacaaaatttgcattatttgccttcatccacgaa |
127 |
Q |
| |
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|||||||| ||||||| |||| |||||||||||||| ||||||||| || ||||||||||||| |||||||||||||| ||| ||||||||||| || |
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| T |
14546003 |
aaaaaggtcaaattagtcgatacccaaacaagtaaacatacttgaccaccagctatgatagcctaagacaaaatttgcattctttaccttcatccaccaa |
14545904 |
T |
|
| Q |
128 |
aagaaacgaagtttaattttatccaacaactaatgtatagaattttcagtattttttaata-ttatattattacgttcattccaca |
212 |
Q |
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||| || |||||||| |||||| ||||||| |||||| ||| | || ||||||||||||| || ||| ||| ||||||||||||| |
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| T |
14545903 |
aaggaataaagtttaactttatctaacaactgatgtatggaactctctgtattttttaatatttctatcatttcgttcattccaca |
14545818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 14541721 - 14541604
Alignment:
| Q |
40 |
ttagccgatgtccaaacaagtaaacggacttgaccatcaattatgatagcctaaaacaaaatttgcattatttgccttcatccacgaaaagaaacgaagt |
139 |
Q |
| |
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|||| ||||| || ||||| ||||| | |||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
14541721 |
ttagtcgatgcccgaacaaataaacaggcttgaccaccaactatgatagcctaagacaaaatttgcattatttgccttcattcactaaaagaagtaaagt |
14541622 |
T |
|
| Q |
140 |
ttaattttatccaacaac |
157 |
Q |
| |
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|||| ||||||||||||| |
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| T |
14541621 |
ttaactttatccaacaac |
14541604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 177 - 510
Target Start/End: Original strand, 33096755 - 33097089
Alignment:
| Q |
177 |
tattttttaatattatattattacgttcattccacacaactcaaacataaatgagtcaaataaattgtaaaaatgagcgccacactttcaaaccacatgt |
276 |
Q |
| |
|
||||||| |||||| ||| ||| |||||||||||||| | ||||||| ||| || ||||||| ||||||||| ||| | |||||||||||| ||| |
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| T |
33096755 |
tatttttaaatattctatcatttcgttcattccacacgattcaaacacaaaggaaccaaataagttgtaaaaagaagcatcctactttcaaaccatctgt |
33096854 |
T |
|
| Q |
277 |
cagataaataaactgaataaaatgatttgaaaacaattgtggatctgctgacggaaacccaatccatgaacaaactaacgtcgaaagagaaccaaaattg |
376 |
Q |
| |
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| ||||||||||| || ||||||| ||||| |||| ||||| || | || ||| |||||| | || | ||||||| || |||||||||||||| || |
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|
| T |
33096855 |
cgaataaataaactaaacgaaatgatctgaaagaaattaaggatccgccgccgaaaaaccaatcgaagaccgaactaacatccaaagagaaccaaaagtg |
33096954 |
T |
|
| Q |
377 |
ctgcatgaaagaaaaaggtggtgag-ctgattcaacacctccacaaccgaacacacaatagtaagtatctcgagagataatgtcgcaagacaccaagttt |
475 |
Q |
| |
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|||| ||| ||| | ||| |||| ||||||||||| ||||||||||| |||||| |||| || | | |||||| || | | |||||| || ||| |
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|
| T |
33096955 |
ttgcacaaaataaataagtgttgagcctgattcaacatctccacaaccgggcacacagtagtgagcttatgaagagatgataccacgagacactaaattt |
33097054 |
T |
|
| Q |
476 |
gcttttgttggtaatctgtcatgaagtagtctcca |
510 |
Q |
| |
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| T |
33097055 |
gattttgctggtaatatgttatgaagtagtctcca |
33097089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 40071017 - 40070965
Alignment:
| Q |
77 |
caattatgatagcctaaaacaaaatttgcattatttgccttcatccacgaaaa |
129 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
40071017 |
caattatgataacctaaaacaaaatttacagattttaccttcatccacgaaaa |
40070965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 506
Target Start/End: Complemental strand, 21973789 - 21973681
Alignment:
| Q |
398 |
tgagctgattcaacacctccacaaccgaacacacaatagtaagtatctcgagagataatgtcgcaagacaccaagtttgcttttgttggtaatctgtcat |
497 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||| | || |||| || |||||||||||||| ||||||| | ||||| ||||||||||||| |
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|
| T |
21973789 |
tgagttgattcaacacctccacacccagtcacacaatactgagcatctaaagggataatgtcgcaagctcccaagttggattttgaaggtaatctgtcat |
21973690 |
T |
|
| Q |
498 |
gaagtagtc |
506 |
Q |
| |
|
||||||||| |
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|
| T |
21973689 |
gaagtagtc |
21973681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 9864 - 9968
Alignment:
| Q |
99 |
aatttgcattatttgccttcatccacgaaaagaaacgaagtttaattttatccaacaactaatgtatagaattttcagtattttttaatattatattatt |
198 |
Q |
| |
|
||||| |||| |||||||| |||||| ||||| || |||||||| ||||| ||||| || | |||| |||| || ||||||||||||| | ||||||| |
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|
| T |
9864 |
aatttacattctttgcctttatccaccaaaaggaataaagtttaactttattcaacatctgaggtatgaaattctctgtattttttaataatctattatt |
9963 |
T |
|
| Q |
199 |
acgtt |
203 |
Q |
| |
|
|||| |
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|
| T |
9964 |
tcgtt |
9968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 3903176 - 3903232
Alignment:
| Q |
99 |
aatttgcattatttgccttcatccacgaaaagaaacgaagtttaattttatccaaca |
155 |
Q |
| |
|
||||| |||| |||||||| |||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
3903176 |
aatttacattctttgcctttatccaccaaaagaaataaagtttaactttatccaaca |
3903232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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