View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208-Insertion-14 (Length: 394)
Name: NF0208-Insertion-14
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 34704512 - 34704349
Alignment:
| Q |
8 |
atgaatcaacgacctcaacaatctatacatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaatt |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
34704512 |
atgaatcaacgacctaaacaatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcatcgagattatgcaaaatgaatc |
34704413 |
T |
|
| Q |
108 |
ggatcaaactctaataatcaaaatataccatcattccttgtgatgaagaatctgctataaccgt |
171 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34704412 |
ggatcaaactctaataagcaaaatataccatcattccttgtgatgaagaatctgctataaccgt |
34704349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 34704281 - 34704127
Alignment:
| Q |
239 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctatttccaacggaaat |
338 |
Q |
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||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
34704281 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgtagttctgtttctccgtctatttccaacggaaat |
34704182 |
T |
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| Q |
339 |
tccttttgttgagaaggatttggattacccattgctgaaaaattttctgcagaaga |
394 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
34704181 |
tccttttgttgagaaggatttggattatccattgctg-aaaattttctgctgaaga |
34704127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 32178884 - 32178960
Alignment:
| Q |
243 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttc |
319 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||| |||||||||||| || |||||| ||| |||||||| |
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| T |
32178884 |
gatttgtctatggaagagattgaggtgaattgttgaagtaagttagagtgaagttaaaattgttattcagtttcttc |
32178960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 28548689 - 28548850
Alignment:
| Q |
8 |
atgaatcaacgacctcaacaatctatacatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaatt |
107 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
28548689 |
atgaatcaacgacctaaacaatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcatcgagattatgcaaaatgaatc |
28548788 |
T |
|
| Q |
108 |
ggatcaaactctaataatcaaaatataccatcattccttgtgatgaagaatctgctataacc |
169 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548789 |
ggatcaaactctaataagcaaaatataccatcattccttgtgatgaagaatctgctataacc |
28548850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 41867721 - 41867558
Alignment:
| Q |
8 |
atgaatcaacgacctcaacaatctatacatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaatt |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
41867721 |
atgaatcaacgacctaaacaatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcattgagattatgcaaaatgaatc |
41867622 |
T |
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| Q |
108 |
ggatcaaactctaataatcaaaatataccatcattccttgtgatgaagaatctgctataaccgt |
171 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41867621 |
ggatcaaactctaataagcaaaatataccatcattccttgtgatgaagaatctgctataaccgt |
41867558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 28548920 - 28549074
Alignment:
| Q |
239 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctatttccaacggaaat |
338 |
Q |
| |
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||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28548920 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttctccgtctatttccaacggaaat |
28549019 |
T |
|
| Q |
339 |
tccttttgttgagaaggatttggattacccattgctgaaaaattttctgcagaaga |
394 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
28549020 |
tccttttgttgagaaggatttggattatccattgctg-aaaattttctgctgaaga |
28549074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 41867498 - 41867344
Alignment:
| Q |
239 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttcgtctatttccaacggaaat |
338 |
Q |
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||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41867498 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatattgttgttctgtttctccgtctatttccaacggaaat |
41867399 |
T |
|
| Q |
339 |
tccttttgttgagaaggatttggattacccattgctgaaaaattttctgcagaaga |
394 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
41867398 |
tccttttgttgagaaggatttggattatccattgctg-aaaattttctgctgaaga |
41867344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 18638130 - 18638206
Alignment:
| Q |
243 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttc |
319 |
Q |
| |
|
||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18638130 |
gatttgtcgatggaagagattgaagtgaattgttgaagtaaattggagtgaagtgaatattgttgttctgtttcttc |
18638206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 18637999 - 18638030
Alignment:
| Q |
136 |
catcattccttgtgatgaagaatctgctataa |
167 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18637999 |
catcattccttgtgatgaagaatctgctataa |
18638030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 40853815 - 40853891
Alignment:
| Q |
243 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatattgttgttctgtttcttc |
319 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||| |||||||||||| || |||||| ||| |||||||| |
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|
| T |
40853815 |
gatttgtctatggaagagattgaggtgaattgttgaagtaagttagagtgaagttaaaattgttattcagtttcttc |
40853891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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