View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0208-Insertion-15 (Length: 902)

Name: NF0208-Insertion-15
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0208-Insertion-15
NF0208-Insertion-15
[»] chr1 (10 HSPs)
chr1 (198-902)||(10604731-10605445)
chr1 (86-169)||(10605474-10605557)
chr1 (489-537)||(30762018-30762066)
chr1 (492-554)||(10785093-10785155)
chr1 (489-554)||(4431062-4431127)
chr1 (489-554)||(49820543-49820608)
chr1 (492-551)||(27905821-27905880)
chr1 (492-539)||(34159045-34159092)
chr1 (489-554)||(7451890-7451955)
chr1 (489-530)||(32882774-32882815)
[»] chr3 (4 HSPs)
chr3 (309-404)||(32604646-32604741)
chr3 (492-540)||(46358014-46358062)
chr3 (492-554)||(32010174-32010236)
chr3 (492-554)||(50518721-50518783)
[»] chr4 (5 HSPs)
chr4 (492-554)||(42719543-42719605)
chr4 (490-551)||(19814847-19814908)
chr4 (485-555)||(21983500-21983569)
chr4 (485-554)||(28967262-28967330)
chr4 (489-546)||(52009220-52009277)
[»] chr6 (2 HSPs)
chr6 (492-546)||(3880244-3880298)
chr6 (489-554)||(13423749-13423814)
[»] chr8 (4 HSPs)
chr8 (493-554)||(12197708-12197769)
chr8 (493-554)||(12442136-12442197)
chr8 (489-532)||(2613176-2613219)
chr8 (485-549)||(8843739-8843802)
[»] chr7 (5 HSPs)
chr7 (485-550)||(3478739-3478804)
chr7 (493-554)||(33719352-33719413)
chr7 (492-554)||(6726051-6726113)
chr7 (485-554)||(42532884-42532953)
chr7 (485-554)||(47456699-47456767)
[»] chr5 (3 HSPs)
chr5 (489-554)||(8297857-8297922)
chr5 (485-545)||(25992397-25992457)
chr5 (489-554)||(23426687-23426752)
[»] chr2 (3 HSPs)
chr2 (485-554)||(15361111-15361179)
chr2 (492-546)||(4975140-4975194)
chr2 (492-546)||(4993048-4993102)


Alignment Details
Target: chr1 (Bit Score: 543; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 198 - 902
Target Start/End: Complemental strand, 10605445 - 10604731
Alignment:
Q  198 aaagcttagtattcaattatacacacacacttaagggagttagatatggctgatacatgtgaaaaaatgagcaaggggctacgtaaaattaagccttacc 297  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10605445 aaagcttagtattcaatta--cacacacacttaagggagttagatatggctgatacatgtgaaaaaatgagcaaggggctacgtaaaattaagccttatc 10605348  T
Q  298 ttgctatggtgtcccttcaatttggctatgcaggaatgtacatcatcactatggtttcattcaagcatggcatgagtcattgggtactctctgtgtaccg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605347 ttgctatggtgtcccttcaatttggctatgcaggaatgtacatcatcactatggtttcattcaagcatggcatgagtcattgggtactctctgtgtaccg 10605248  T
Q  398 tcatgttattgctactatcttcatggccccttttgcccttgtccttgaaaggtccttattattcttatctacctcatcannnnnnnn---------gaat 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||    
T  10605247 tcatgttattgctactatcttcatggccccttttgcccttgtccttgaaaggtccttattattcttatctacctcatcactatactttttttttttgaat 10605148  T
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaatatctacctcatcactatannnnnnnn-agacacca 587  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||         ||||||||    
T  10605147 cagcaaattttatttaacaatcagatccctgctcaagacgaatagagactggtgaaacagagaatatatacctcatcactatatttttttttagacacca 10605048  T
Q  588 ataacatgttgagacttcgctagggttagtaagtcaaaacaccaatgaaatgttgagactctagttggtggaggccaaacccttcactacacaactaata 687  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10605047 ataacatgttgagacttcattagggttagtaagtcaaaacaccaatgacatgttgagactctagttggttgaggccaaacccttcactacacaactaata 10604948  T
Q  688 acacatgttttataatatatagttttgcatgtgaaaaaccattatttggac--aataattattttaaaagaaacttatttgtctaaattaatcatgctat 785  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10604947 acacatgttttataatatatagttttgcatgtgaaaaaccattatttggacaaaataattattttaaaagaaacttatttgtctaaattaatcatgctat 10604848  T
Q  786 aaaatatgaaacaaaagtacaccttttctatcattctttttctatgctagctataatatttcaattgaatgtttattgatcatcaacttattatgttctg 885  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||| ||    
T  10604847 aaaatatcaaacaaaagtacatcttttctatcattctttttctatgctagctataatattttaatttaatgtttattgatcatcaacttatactgttttg 10604748  T
Q  886 ttgcatcttcttttaca 902  Q
    |||||||||||||||||    
T  10604747 ttgcatcttcttttaca 10604731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 10605557 - 10605474
Alignment:
Q  86 gggcctataagaaggcaatttcacattttctagtgtcatccacaaactcacaagtcacaaaccatttcctccattgtgagagtt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605557 gggcctataagaaggcaatttcacattttctagtgtcatccacaaactcacaagtcacaaaccatttcctccattgtgagagtt 10605474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 30762018 - 30762066
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagac 537  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  30762018 cagcaaattttatttaaaaatcagatccttgctcaagacgaacagagac 30762066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 10785093 - 10785155
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||  || |||| |||||||    
T  10785093 caaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaata 10785155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 4431127 - 4431062
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||||||||| ||||| || |||  ||||||||||||||||||||| ||||||  |||||||    
T  4431127 cagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaata 4431062  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 49820608 - 49820543
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||||||||||||||||| ||||  ||||||||||  ||||||| | ||||| |||||||||    
T  49820608 cagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaata 49820543  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 27905880 - 27905821
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagaga 551  Q
    |||| |||||| ||||| ||||||| ||||||||| ||||||||||| ||||| ||||||    
T  27905880 caaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagaga 27905821  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 539
Target Start/End: Complemental strand, 34159092 - 34159045
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagacca 539  Q
    |||| |||||| ||||||||||||| |||||||||| |||||||||||    
T  34159092 caaaatttattaaacaatcagatccctgctcaagacaaatagagacca 34159045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 554
Target Start/End: Original strand, 7451890 - 7451955
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||| ||||| |||||  |||||  ||||||||||||| ||||||| ||||||| |||||||    
T  7451890 cagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaata 7451955  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 32882815 - 32882774
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaa 530  Q
    |||||||||||||| |||||||| |||| |||||||||||||    
T  32882815 cagcaaattttattaaacaatcacatccctgctcaagacgaa 32882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 309 - 404
Target Start/End: Complemental strand, 32604741 - 32604646
Alignment:
Q  309 tcccttcaatttggctatgcaggaatgtacatcatcactatggtttcattcaagcatggcatgagtcattgggtactctctgtgtaccgtcatgtt 404  Q
    |||||||||||||| ||  | || ||||||||||| ||||||||||| ||||| ||||| ||||| |||||| | ||||| |||||||||||||||    
T  32604741 tcccttcaatttggttactcggggatgtacatcattactatggtttctttcaaacatggtatgagccattggattctctccgtgtaccgtcatgtt 32604646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 492 - 540
Target Start/End: Original strand, 46358014 - 46358062
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccag 540  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  46358014 caaattttatttaacaaccagatccctgctcaagacgaacagagaccag 46358062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 32010236 - 32010174
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||||||||| ||||||| | ||||||||||| ||||| | ||||  |||||||||    
T  32010236 caaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaata 32010174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 50518721 - 50518783
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||| ||||||  ||||| ||||||||||||| ||||||  ||||||| |||||||    
T  50518721 caaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaata 50518783  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 492 - 554
Target Start/End: Complemental strand, 42719605 - 42719543
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |||||||    
T  42719605 caaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaata 42719543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 551
Target Start/End: Original strand, 19814847 - 19814908
Alignment:
Q  490 agcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagaga 551  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||  | |||||||||    
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagaga 19814908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 555
Target Start/End: Original strand, 21983500 - 21983569
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaatat 555  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| |||||||  ||||| ||| |||||    
T  21983500 gaatcagcaaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatat 21983569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 28967330 - 28967262
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||||||||||||| || |||||   ||||||||||||| ||||| | |||||||||| ||||    
T  28967330 gaatcagcaaattttatttaa-aaccagatttctgctcaagacgaacagagatcggtgaaacagataata 28967262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 52009277 - 52009220
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 546  Q
    |||||||||||||| ||| | ||||||| ||| ||||||||||||||| | |||||||    
T  52009277 cagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaac 52009220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 546
Target Start/End: Original strand, 3880244 - 3880298
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 546  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||    
T  3880244 caaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaac 3880298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 13423814 - 13423749
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||||||||||||| || || ||| | ||||||||||| |||||||  |||||| |||||||    
T  13423814 cagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaata 13423749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 12197708 - 12197769
Alignment:
Q  493 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||||||||  ||||| |||||||||||||||||||| | ||||| |||||||||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaata 12197769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 12442136 - 12442197
Alignment:
Q  493 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||||||||  ||||| |||||||||||||||||||| | ||||| |||||||||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaata 12442197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 489 - 532
Target Start/End: Original strand, 2613176 - 2613219
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaata 532  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  2613176 cagcaaattttatttaacaatcagatccctactcaagacgaata 2613219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 549
Target Start/End: Original strand, 8843739 - 8843802
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacaga 549  Q
    |||||||||||||||||| || ||||| |||| | ||||||||||| ||||||| ||||||||||    
T  8843739 gaatcagcaaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaacaga 8843802  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 3478804 - 3478739
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagag 550  Q
    |||||||||||||||||||||||| ||||||| || ||||||| || ||||||| |||||| ||||    
T  3478804 gaatcagcaaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaagagag 3478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 33719413 - 33719352
Alignment:
Q  493 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||||| ||||| ||||||| ||||||||||||| ||||| | ||||||| |||||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaata 33719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 554
Target Start/End: Original strand, 6726051 - 6726113
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||| ||||| ||||||  ||||||||||||| ||||| | ||||||| |||||||    
T  6726051 caaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaata 6726113  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 42532884 - 42532953
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||| ||||||||||  |||| || |||| ||||||||||||| ||||||| ||| ||| |||||||    
T  42532884 gaatcagtaaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaata 42532953  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 47456699 - 47456767
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||| ||||||||||| || || ||||||  ||||||||||||| ||||||| |||||||||| ||||    
T  47456699 gaatcaacaaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaata 47456767  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 8297922 - 8297857
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||||||||||| ||||||||||||  | ||||||||||| ||||||| ||||||| |||||||    
T  8297922 cagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaata 8297857  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 545
Target Start/End: Complemental strand, 25992457 - 25992397
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaa 545  Q
    |||||||||||| ||||| ||||| ||||||  ||||||||||||| ||||||| ||||||    
T  25992457 gaatcagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaa 25992397  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 554
Target Start/End: Complemental strand, 23426752 - 23426687
Alignment:
Q  489 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    ||||||||||||||||| ||||||||   ||||||||| ||| ||||||| ||||  |||||||||    
T  23426752 cagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaata 23426687  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 15361179 - 15361111
Alignment:
Q  485 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 554  Q
    |||||| ||||||||||| || ||||| |||| ||||||||||||||||||||  |||||||||| ||||    
T  15361179 gaatcaacaaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataata 15361111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 4975194 - 4975140
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 546  Q
    ||||||||||||||| ||||| ||  ||||||||||||| |||||| ||||||||    
T  4975194 caaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaac 4975140  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 492 - 546
Target Start/End: Complemental strand, 4993102 - 4993048
Alignment:
Q  492 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 546  Q
    ||||||||||||||| ||||| ||  ||||||||||||| |||||| ||||||||    
T  4993102 caaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaac 4993048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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