View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208-Insertion-4 (Length: 785)
Name: NF0208-Insertion-4
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 9 - 785
Target Start/End: Original strand, 14012591 - 14013352
Alignment:
| Q |
9 |
ttttctttctctttatcctttacaaattaaacttctgttcacttgaaatgcaatcaatttaagctgccaataaagaaaataataataatgaacataactt |
108 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012591 |
ttttcttgctctttatcctttacaaattaaacttctattcacttgaaatgcaatcaatttaagctgccaataaagaaaataataataatgaacataactt |
14012690 |
T |
|
| Q |
109 |
gttgtgtacggctattatatgtgaaaaggcttaactaatgctggagtagggaagagaaagagtagcatagcacatcaagcagaaatgagtcacactatt- |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012691 |
gttgtgtacggctattataagtgaaaaggcttaactaatgctggagtagggaagagaaagagtagcatagcacatcaagcagaaatgagtcacactattt |
14012790 |
T |
|
| Q |
208 |
-cttgatgtttaacacaactcactaaagtttagaaagaagagnnnnnnnnnnnnnnnntgccaaacacatccaccaatgaccatccacgaattgcaaatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
14012791 |
gcttgatgtttaacacaactcactaaagtttagaaagaaga---aaagaaaaaaaaaatgtcaaacacatccaccaatgaccatccacgaattgcaaatg |
14012887 |
T |
|
| Q |
307 |
atcgtagtaagattagagcggaagaatttcgtcaagnnnnnnnngtttagagttcaaaaatgataattccaagatcaggggaaagaaaaatataaatcag |
406 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012888 |
atcgtagtaagattagagcggaagaatttcatcaagaaaaaaaagtttcgagtgcaaaaatgataattccaagatcaggggaaagaaaaatataaatcag |
14012987 |
T |
|
| Q |
407 |
caaaggagtcaaactctggaaataattaggatcttcaaagtctattttgaaggaaaacaaatatcatcaatcgaagttattattaggttgggtcacaatc |
506 |
Q |
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||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14012988 |
aaaaggagtcaaactccgggaatatttaggattttcaaagtctattttgaaggaaaacaaatatcatcaatcgaagttattattaggttcggtcacaatc |
14013087 |
T |
|
| Q |
507 |
acatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtctcgaggataaaacaggtacaactagaact |
606 |
Q |
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| T |
14013088 |
acatcgttctctttaaaatattttgcgacactgtccaaaattatgcaagtcaaactaacaatcacgtcgtcttgaagataaaacaggtac---------- |
14013177 |
T |
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| Q |
607 |
agaactagaactgttcaactaactactactacattgtagataacctttcaagcattacacctccaatatggtataactcttaatttaatactgaaatcaa |
706 |
Q |
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|| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14013178 |
--aattagaactgttcaacta---actactacattgtaaataacctttcaagcattacacctccaatatggtataactcttaatttaatattgaaatcaa |
14013272 |
T |
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| Q |
707 |
ttaatattatgatactatggccactattttgatcgctc-aatatggtgttaccaccattttaaccttgaacatctcgaaa |
785 |
Q |
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| T |
14013273 |
ttaatattatgatactatgaccactattttgatcactcaaatatggtgttaccaccattttaaccttgaacatctcgaaa |
14013352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 589
Target Start/End: Original strand, 40147875 - 40147988
Alignment:
| Q |
476 |
atcgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcg |
575 |
Q |
| |
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||||||||| ||||||||||| |||| |||| ||| ||||||||| || ||| | | |||| ||||||||| |||||| || |||| ||| |||| || |
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| T |
40147875 |
atcgaagttgttattaggttgagtcatgatcaggtcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccg |
40147974 |
T |
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| Q |
576 |
tctcgaggataaaa |
589 |
Q |
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||| ||||||||| |
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| T |
40147975 |
cctccaggataaaa |
40147988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 606
Target Start/End: Complemental strand, 24589284 - 24589149
Alignment:
| Q |
471 |
catcaatcgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatca |
570 |
Q |
| |
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|||| ||||||||| ||| || |||| ||||| |||| |||| ||||||||||| ||| | |||||| |||||||| |||||| | |||| ||| || |
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| T |
24589284 |
catctatcgaagttgttactaagttgagtcacgatcagatcgctctctttaaaacgtttcgtgacactttccaaaattgtgcaagatagactatcaacca |
24589185 |
T |
|
| Q |
571 |
cgtcgtctcgaggataaaacaggtacaactagaact |
606 |
Q |
| |
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|| |||||| ||||||||||| || |||||| |||| |
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| T |
24589184 |
cgccgtctccaggataaaacaagtccaactacaact |
24589149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 591
Target Start/End: Original strand, 47574615 - 47574720
Alignment:
| Q |
486 |
ttattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtctcgaggat |
585 |
Q |
| |
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||||||||||| |||||||||| ||| ||||||||| | ||| |||||||||||||||| |||||| |||| || |||||||| || || ||||| |
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| T |
47574615 |
ttattaggttgagtcacaatcaggtcgctctctttaagacgtttcttgacactacccaaaattgtgcaagacaaaatatcaatcacgccgcatccaggat |
47574714 |
T |
|
| Q |
586 |
aaaaca |
591 |
Q |
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|||||| |
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| T |
47574715 |
aaaaca |
47574720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 591
Target Start/End: Complemental strand, 12824008 - 12823895
Alignment:
| Q |
478 |
cgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtc |
577 |
Q |
| |
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||||||| ||||||||||| |||| | || ||| ||||||||| | |||| | | |||| ||||||||| |||||| ||||||| ||| |||| || | |
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| T |
12824008 |
cgaagttgttattaggttgagtcatgaccaggtcgctctctttaagacatttcgtggcactgcccaaaattgtgcaagacaaactatcaaccacgccgcc |
12823909 |
T |
|
| Q |
578 |
tcgaggataaaaca |
591 |
Q |
| |
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|| ||||||||||| |
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| T |
12823908 |
tccaggataaaaca |
12823895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 591
Target Start/End: Original strand, 12796907 - 12797020
Alignment:
| Q |
478 |
cgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtc |
577 |
Q |
| |
|
||||||| ||||||||||| ||||| | || |||| ||||||||| | ||||| | |||| ||||||||| | |||| || |||| ||| |||| |||| |
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| T |
12796907 |
cgaagttgttattaggttgagtcacgaccagatcgctctctttaagacgttttgtggcactgcccaaaattgttcaagacagactatcaaccacgccgtc |
12797006 |
T |
|
| Q |
578 |
tcgaggataaaaca |
591 |
Q |
| |
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|| ||||||||||| |
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| T |
12797007 |
tccaggataaaaca |
12797020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 591
Target Start/End: Complemental strand, 19799128 - 19799013
Alignment:
| Q |
476 |
atcgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcg |
575 |
Q |
| |
|
||||||||| ||| ||||||| ||||| |||| |||| ||||||||| | ||| | | ||||| |||||||| |||||| || |||| ||| |||| || |
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| T |
19799128 |
atcgaagttgttactaggttgagtcacgatcagatcgctctctttaagacgtttcgtggcactatccaaaattgtgcaagacagactatcaaccacgccg |
19799029 |
T |
|
| Q |
576 |
tctcgaggataaaaca |
591 |
Q |
| |
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||| ||||||||||| |
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|
| T |
19799028 |
cctccaggataaaaca |
19799013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 592
Target Start/End: Original strand, 31030547 - 31030624
Alignment:
| Q |
514 |
tctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtctcgaggataaaacag |
592 |
Q |
| |
|
||||||||| | ||| ||||||||||||||| ||||||||| | |||||||| |||| |||||| |||||||||||| |
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| T |
31030547 |
tctctttaagacgtttcgcgacactacccaaa-ttatgcaaggtagactaacaaccacgccgtctccaggataaaacag |
31030624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 591
Target Start/End: Complemental strand, 758481 - 758368
Alignment:
| Q |
478 |
cgaagttattattaggttgggtcacaatcacatcgttctctttaaaatattttgcgacactacccaaaattatgcaagtcaaactaacaatcacgtcgtc |
577 |
Q |
| |
|
||||||| ||| ||||||| ||||| | || |||| ||||||||| | ||| | | |||||||||||||| |||||| || |||| ||| |||| || | |
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| T |
758481 |
cgaagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagactatcaaccacgccgcc |
758382 |
T |
|
| Q |
578 |
tcgaggataaaaca |
591 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
758381 |
tccaggataaaaca |
758368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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