View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0208-Insertion-7 (Length: 155)

Name: NF0208-Insertion-7
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0208-Insertion-7
NF0208-Insertion-7
[»] chr4 (18 HSPs)
chr4 (8-155)||(18782673-18782820)
chr4 (13-84)||(2996594-2996665)
chr4 (31-84)||(19395049-19395102)
chr4 (13-89)||(23459649-23459725)
chr4 (13-84)||(55064856-55064928)
chr4 (17-84)||(27123330-27123397)
chr4 (13-84)||(28300277-28300348)
chr4 (13-75)||(55414406-55414469)
chr4 (31-84)||(22662225-22662278)
chr4 (31-79)||(1965980-1966028)
chr4 (13-84)||(17822842-17822914)
chr4 (25-69)||(27124137-27124181)
chr4 (13-84)||(45214391-45214463)
chr4 (13-57)||(52259652-52259696)
chr4 (13-68)||(42121509-42121563)
chr4 (14-80)||(49803230-49803297)
chr4 (16-51)||(50662749-50662784)
chr4 (17-84)||(50800008-50800074)
[»] chr6 (14 HSPs)
chr6 (14-84)||(20368158-20368228)
chr6 (13-83)||(31624111-31624181)
chr6 (12-84)||(2455279-2455352)
chr6 (28-83)||(1575931-1575986)
chr6 (28-84)||(33832251-33832307)
chr6 (54-109)||(2263254-2263309)
chr6 (17-84)||(2460129-2460196)
chr6 (16-89)||(9912163-9912237)
chr6 (29-82)||(769175-769228)
chr6 (23-68)||(17770448-17770493)
chr6 (25-69)||(2460936-2460980)
chr6 (17-69)||(7148691-7148743)
chr6 (31-79)||(7931709-7931757)
chr6 (54-138)||(26559163-26559247)
[»] chr5 (10 HSPs)
chr5 (13-83)||(7674669-7674739)
chr5 (13-84)||(39105485-39105557)
chr5 (17-84)||(10125696-10125763)
chr5 (16-84)||(16457956-16458025)
chr5 (28-69)||(12467169-12467210)
chr5 (24-69)||(25705652-25705697)
chr5 (13-44)||(12425592-12425623)
chr5 (57-84)||(15246899-15246926)
chr5 (13-84)||(17368697-17368768)
chr5 (28-75)||(30988068-30988115)
[»] chr1 (24 HSPs)
chr1 (14-78)||(24915034-24915099)
chr1 (16-79)||(6262044-6262107)
chr1 (15-84)||(4445731-4445800)
chr1 (15-84)||(2777915-2777984)
chr1 (13-84)||(37473424-37473496)
chr1 (25-84)||(29635380-29635439)
chr1 (31-82)||(35925729-35925780)
chr1 (19-84)||(2295123-2295189)
chr1 (18-83)||(3887610-3887676)
chr1 (13-83)||(7136977-7137047)
chr1 (18-83)||(7941632-7941698)
chr1 (16-65)||(10799486-10799535)
chr1 (16-69)||(10809369-10809422)
chr1 (31-84)||(37811891-37811944)
chr1 (13-66)||(41195189-41195242)
chr1 (28-84)||(4481966-4482022)
chr1 (16-44)||(5709651-5709679)
chr1 (20-84)||(10280677-10280741)
chr1 (13-84)||(15942725-15942797)
chr1 (13-65)||(23895350-23895402)
chr1 (16-51)||(473188-473223)
chr1 (16-51)||(1509775-1509810)
chr1 (16-84)||(3233992-3234061)
chr1 (13-83)||(51695473-51695544)
[»] chr2 (18 HSPs)
chr2 (13-78)||(680524-680589)
chr2 (16-89)||(24347746-24347819)
chr2 (13-84)||(16451139-16451211)
chr2 (13-68)||(1893275-1893330)
chr2 (16-84)||(43279506-43279575)
chr2 (16-51)||(12194976-12195011)
chr2 (16-138)||(26202052-26202174)
chr2 (13-50)||(12464485-12464522)
chr2 (11-84)||(13220453-13220525)
chr2 (13-81)||(18066149-18066218)
chr2 (31-84)||(43530089-43530142)
chr2 (19-79)||(10285887-10285947)
chr2 (13-81)||(33941930-33941998)
chr2 (13-69)||(34652029-34652085)
chr2 (12-84)||(35378510-35378582)
chr2 (16-51)||(12289821-12289856)
chr2 (13-84)||(16398449-16398520)
chr2 (17-84)||(38809351-38809418)
[»] chr8 (12 HSPs)
chr8 (13-89)||(43504772-43504848)
chr8 (28-79)||(43368683-43368734)
chr8 (13-74)||(21653102-21653163)
chr8 (16-81)||(10358602-10358667)
chr8 (19-84)||(26473730-26473795)
chr8 (13-66)||(42597459-42597512)
chr8 (57-113)||(45098922-45098978)
chr8 (16-83)||(778413-778480)
chr8 (19-138)||(9700028-9700147)
chr8 (28-79)||(31875578-31875629)
chr8 (13-80)||(38307683-38307750)
chr8 (16-51)||(43045736-43045771)
[»] chr7 (16 HSPs)
chr7 (13-81)||(25670567-25670635)
chr7 (28-83)||(15740390-15740445)
chr7 (28-132)||(30535599-30535703)
chr7 (13-84)||(33678801-33678873)
chr7 (13-83)||(34035938-34036009)
chr7 (13-44)||(47130803-47130834)
chr7 (16-84)||(420384-420453)
chr7 (16-84)||(11619135-11619204)
chr7 (23-83)||(11048058-11048118)
chr7 (30-66)||(29768635-29768671)
chr7 (12-44)||(47303425-47303457)
chr7 (13-68)||(529396-529451)
chr7 (13-44)||(9050656-9050687)
chr7 (33-84)||(19719047-19719098)
chr7 (8-51)||(39279978-39280021)
chr7 (19-85)||(39967947-39968014)
[»] chr3 (24 HSPs)
chr3 (23-81)||(5391910-5391968)
chr3 (31-84)||(29427623-29427676)
chr3 (16-84)||(39980753-39980822)
chr3 (17-69)||(3044252-3044304)
chr3 (13-84)||(21367688-21367760)
chr3 (13-65)||(52619024-52619076)
chr3 (35-78)||(2175833-2175876)
chr3 (13-44)||(7301360-7301391)
chr3 (17-68)||(25925767-25925818)
chr3 (16-51)||(35696262-35696297)
chr3 (13-84)||(37273155-37273226)
chr3 (41-131)||(2304202-2304292)
chr3 (14-84)||(28240340-28240410)
chr3 (13-83)||(45541592-45541662)
chr3 (13-84)||(42747759-42747832)
chr3 (13-84)||(402519-402591)
chr3 (13-65)||(3845559-3845611)
chr3 (13-84)||(24085315-24085387)
chr3 (30-66)||(48300478-48300514)
chr3 (31-79)||(50004691-50004739)
chr3 (16-51)||(901948-901983)
chr3 (35-78)||(2152162-2152205)
chr3 (13-84)||(30573892-30573963)
chr3 (16-51)||(46478713-46478748)
[»] scaffold0221 (1 HSPs)
scaffold0221 (22-66)||(2796-2840)
[»] scaffold0608 (1 HSPs)
scaffold0608 (28-84)||(9615-9671)
[»] scaffold0147 (1 HSPs)
scaffold0147 (16-44)||(23655-23683)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 5e-76; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 18782820 - 18782673
Alignment:
Q  8 aaataatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgttta 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18782820 aaataatcttggagaacttgtgaaaataagttgaaaatagctgaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgttta 18782721  T
Q  108 tgccagcacataaattcaaataagttaatccgaaaagaccatattacc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18782720 tgccagcacataaattcaaataagttaatccgaaaagaccatattacc 18782673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 2996594 - 2996665
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| | | ||||||||||||||||| ||||||   ||||||||||||||| ||||||||| ||||    
T  2996594 atcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 19395102 - 19395049
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||| ||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  19395102 aaataagctgaaaatagcttataaacatgtcgtaagttgtttttataagttctc 19395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 23459649 - 23459725
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 89  Q
    |||||| | ||||| |||| |||||||||||||| ||||  ||||||||||||| |  |||||||||||||| ||||    
T  23459649 atcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttcataagttctccgaaa 23459725  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 55064856 - 55064928
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagct-taaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |||||||||| |||||| |||| |  ||| ||||||||||||| ||||| ||||||||    
T  55064856 atcttggagaacttatgaaaataagatgaaaaaagctattgaaaaatgtcataagttgttttcaaaagttctc 55064928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 27123397 - 27123330
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||| ||| || |||||||||||||| | |||||| ||||||||||||||| || |||||| ||||    
T  27123397 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctc 27123330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 28300348 - 28300277
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||| ||| ||| ||||||||||||||||| | ||||| ||||||||||| | || |||||||| |||||    
T  28300348 atcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattctc 28300277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 55414469 - 55414406
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttca 75  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||| |||||||||| || |||||    
T  55414469 atcttggagaacttatgaaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 22662278 - 22662225
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||| |||||||||||||  ||||| |||||||||  ||||||||||||||    
T  22662278 aaataagctgaaaatagcttatgaacatatcataagtttttttcataagttctc 22662225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 1965980 - 1966028
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    ||||||||| |||| ||||||  |||||||||||||||| |||||||||    
T  1965980 aaataagttaaaaacagcttatgaacatgtcataagttgttttcataag 1966028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 17822914 - 17822842
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |||||||||| | |||| ||||||  ||| |||||||||| || ||||||| ||||||    
T  17822914 atcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctc 17822842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 27124181 - 27124137
Alignment:
Q  25 ttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||||||||| |||||||||||||| | |||||| ||||||||    
T  27124181 ttgtgaaaataaattgaaaatagcttatagacatgtaataagttg 27124137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 45214391 - 45214463
Alignment:
Q  13 atcttggagaacttg-tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||  | |||||||| ||||||||| ||   ||| |||||||||||| ||||||||||||||    
T  45214391 atcttggagaacttaataaaaataagctgaaaatagattgtgaacgtgtcataagttgatttcataagttctc 45214463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 52259652 - 52259696
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca 57  Q
    |||| ||||| ||| |||||||||||||||||||||||| |||||    
T  52259652 atctgggagagcttatgaaaataagttgaaaatagcttataaaca 52259696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 42121509 - 42121563
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 68  Q
    ||||||||||||||||| ||||||| || ||| ||||||  |||||||||||||||    
T  42121509 atcttggagaacttgtggaaataagctg-aaacagcttatgaacatgtcataagtt 42121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 49803230 - 49803297
Alignment:
Q  14 tcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataagttgctttcataagt 80  Q
    |||||||||||||  || |||||| |||||| |||| |  |||| |||||||||||||||||||||||    
T  49803230 tcttggagaacttaagacaataagctgaaaacagctaatgaacaatgtcataagttgctttcataagt 49803297  T

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Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 50662784 - 50662749
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    |||||||| |||||||||||||||||||| ||||||    
T  50662784 ttggagaaattgtgaaaataagttgaaaaaagctta 50662749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 50800074 - 50800008
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| || ||||||| |||||| |||||| | ||||||||||||||| || ||| |||||||    
T  50800074 tggagaactt-tggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctc 50800008  T

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Target: chr6 (Bit Score: 51; Significance: 1e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 20368228 - 20368158
Alignment:
Q  14 tcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||| |||||||||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  20368228 tcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctc 20368158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31624111 - 31624181
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    ||||||||||| || ||||||||||||||||| ||||||  ||||||||||||| || |||||||||||||    
T  31624111 atcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2455279 - 2455352
Alignment:
Q  12 aatcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    |||||||||||| ||||||||||||| |||||| | |||| |||| |||| |||||||| ||||||||||||||    
T  2455279 aatcttggagaagttgtgaaaataagctgaaaacaacttataaacaatgtaataagttgttttcataagttctc 2455352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 1575931 - 1575986
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    |||||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  1575931 tgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 1575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 33832307 - 33832251
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| | |||| | |||| ||||||||||||||||| ||||||||||||||    
T  33832307 tgaaaataagctaaaaacaacttataaacatgtcataagttgttttcataagttctc 33832251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 2263254 - 2263309
Alignment:
Q  54 aacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatg 109  Q
    ||||||||||| |||| ||||||||||||||  ||| |||||||||| ||||||||    
T  2263254 aacatgtcatatgttgttttcataagttctctcaaacagtttcttaagtgtttatg 2263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 2460196 - 2460129
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||| ||| || |||||||||||||| | |||||| ||||||||||||||| || |||||| ||||    
T  2460196 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctc 2460129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9912237 - 9912163
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataagttgctttcataagttctcggaaa 89  Q
    ||||||||||| |||||||||| | |||| ||||||  |||| ||||||||| || |||||||||||||| ||||    
T  9912237 ttggagaacttatgaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttctccgaaa 9912163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 769175 - 769228
Alignment:
Q  29 gaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttc 82  Q
    |||| ||||||||||| ||||||  ||||||||||||| || ||||||||||||    
T  769175 gaaagtaagttgaaaacagcttatgaacatgtcataagatgttttcataagttc 769228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 17770493 - 17770448
Alignment:
Q  23 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 68  Q
    |||| |||||||||||||||||||| |||  |||||||||||||||    
T  17770493 acttatgaaaataagttgaaaatagtttatgaacatgtcataagtt 17770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 2460980 - 2460936
Alignment:
Q  25 ttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||||||||| |||||||||||||| | |||||| ||||||||    
T  2460980 ttgtgaaaataaattgaaaatagcttatagacatgtaataagttg 2460936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 7148691 - 7148743
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||| ||| ||||||||||||||||||||||||   ||| |||||||||||    
T  7148691 tggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttg 7148743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 7931757 - 7931709
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    ||||||| |||||| | ||||| |||||||||||||||| |||||||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataag 7931709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 26559247 - 26559163
Alignment:
Q  54 aacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatcc 138  Q
    ||||| |||||||||| |||||||||||||   ||| ||| ||  ||||| ||||||||| |  |||| ||||||||||||||||    
T  26559247 aacatatcataagttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatcc 26559163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 9e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 7674669 - 7674739
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    ||||||||||| ||||||||||||| |||||| | |||| ||||||||||||||||| || ||||||||||    
T  7674669 atcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttct 7674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 39105485 - 39105557
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |||||||||| | |||||||||||  ||| |||||||||| || |||||||| |||||    
T  39105485 atcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataaattctc 39105557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10125763 - 10125696
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||| ||| |||||||||| |||||| | ||||  |||||||||||||||| || |||||||||||    
T  10125763 tggagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctc 10125696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 16458025 - 16457956
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta--aaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||||||||||  |||||| ||||||  ||||| ||||||||| || ||||||||||||||    
T  16458025 ttggagaacttgtgaaaataaactgaaaagagcttatgaaaac-tgtcataagctgttttcataagttctc 16457956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 12467169 - 12467210
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||||||| |||||| |||||| |||||||||||||||||    
T  12467169 tgaaaataagctgaaaacagcttataaacatgtcataagttg 12467210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 25705697 - 25705652
Alignment:
Q  24 cttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    ||||||||||||||||||||| |||||| | |||||||| ||||||    
T  25705697 cttgtgaaaataagttgaaaacagcttatagacatgtcacaagttg 25705652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 12425592 - 12425623
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaa 44  Q
    |||||||||||||| |||||||||||||||||    
T  12425592 atcttggagaacttatgaaaataagttgaaaa 12425623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 84
Target Start/End: Original strand, 15246899 - 15246926
Alignment:
Q  57 atgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||||||||||||||||    
T  15246899 atgtcataagttgctttcataagttctc 15246926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 17368697 - 17368768
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||  || || ||||||| ||||||  || ||  |||||||||||||||| ||||||||||||||    
T  17368697 atcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttctc 17368768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 30988115 - 30988068
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttca 75  Q
    ||||||||||||||||| || | | ||||||||||||||||| |||||    
T  30988115 tgaaaataagttgaaaagagttgacaaacatgtcataagttggtttca 30988068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 24915099 - 24915034
Alignment:
Q  14 tcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataa 78  Q
    ||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||||| ||||||||    
T  24915099 tcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagttgttttcataa 24915034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 6262044 - 6262107
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    ||||||| |||||| |||||||||||||||||||||  |||||||||||||||| | |||||||    
T  6262044 ttggagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataag 6262107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 4445731 - 4445800
Alignment:
Q  15 cttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||| ||||||||||||||||||||| |||||   ||||||| ||||| ||||||||||| |||||    
T  4445731 cttggagagcttgtgaaaataagttgaaaacagcttctgaacatgttataagctgctttcataaattctc 4445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 2777915 - 2777984
Alignment:
Q  15 cttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||| |||||||||| ||||||  |||||  || | ||||||||||| ||||||||||||||    
T  2777915 cttggagaacttatgaaaataagctgaaaacggcttatgaatacgtcataagttggtttcataagttctc 2777984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 37473424 - 37473496
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |||||||||| || ||| ||||||  ||| ||||||||||||| ||||| ||||||||    
T  37473424 atcttggagaacttatgaaaataagctggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 37473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 29635380 - 29635439
Alignment:
Q  25 ttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||| |||||| | |||| ||||||||||||| ||| |||||||| |||||    
T  29635380 ttgtgaaaataagctgaaaacaacttataaacatgtcataacttgttttcataaattctc 29635439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 35925729 - 35925780
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttc 82  Q
    |||||||||||||| ||||||  ||||||||||||| || ||||||||||||    
T  35925729 aaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2295123 - 2295189
Alignment:
Q  19 gagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||||||||||||| | ||||||  |||  ||||||||| || ||||||||||||||    
T  2295123 gagaacttgtgaaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagttctc 2295189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 3887676 - 3887610
Alignment:
Q  18 ggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 83  Q
    ||||||||| |||||||||||| |||| ||||||  ||| |||||||||| || |||||||||||||    
T  3887676 ggagaacttatgaaaataagttaaaaacagcttatgaacaatgtcataagatgttttcataagttct 3887610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 7137047 - 7136977
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    |||||||||||||| |||||||||| |||||||| ||||  || ||||||||||    |||||||||||||    
T  7137047 atcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttct 7136977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7941632 - 7941698
Alignment:
Q  18 ggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 83  Q
    ||||||||| |||||||||||||||||||||||   ||| |||||||||| || |||||||| ||||    
T  7941632 ggagaacttatgaaaataagttgaaaatagcttcggaacaatgtcataagctgttttcataaattct 7941698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10799486 - 10799535
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 65  Q
    ||||||||||| |||||||||| |||||| || ||| |||||||||||||    
T  10799486 ttggagaacttatgaaaataagctgaaaacagattataaacatgtcataa 10799535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 10809369 - 10809422
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    ||||||||||| |||||||||| |||||| |  ||| |||||||||||||||||    
T  10809369 ttggagaacttatgaaaataagctgaaaacatattataaacatgtcataagttg 10809422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 37811891 - 37811944
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| || |||  ||||||||||||| || ||||||||||||||    
T  37811891 aaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctc 37811944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 41195242 - 41195189
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 66  Q
    |||||||||||||| |||||||||| |||||| ||||||  || ||||||||||    
T  41195242 atcttggagaacttatgaaaataagctgaaaaaagcttattaaaatgtcataag 41195189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 4481966 - 4482022
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| | |||| ||||||  ||||||| |||||||| ||||||||||||||    
T  4481966 tgaaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctc 4482022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 5709651 - 5709679
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaa 44  Q
    |||||||||||||||||||||||||||||    
T  5709651 ttggagaacttgtgaaaataagttgaaaa 5709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 10280677 - 10280741
Alignment:
Q  20 agaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||| |||||||||| ||| || ||||||  ||||||  |||||||| ||||||||||||||    
T  10280677 agaacttatgaaaataagctgacaaaagcttatgaacatgaaataagttgttttcataagttctc 10280741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 15942797 - 15942725
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaata-gcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |  ||||||| |||||| | |||||  |||||||||||||||| |||||||| |||||    
T  15942797 atcttggagaacttattgaaataagctgaaaacatgcttatgaacatgtcataagttgttttcataaattctc 15942725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 23895350 - 23895402
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 65  Q
    |||||||||| |||||| ||||||||| |||||||||||  |||||| |||||    
T  23895350 atcttggagagcttgtggaaataagttaaaaatagcttacgaacatgccataa 23895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 473188 - 473223
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  473188 ttggagaacttatgaaaataagttgaaaaaagctta 473223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 1509775 - 1509810
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    |||||||||||||| |||||||||||||| ||||||    
T  1509775 ttggagaacttgtgtaaataagttgaaaaaagctta 1509810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 3234061 - 3233992
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta--aaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||| ||||||||||| ||||| | ||||  ||||| ||| |||||||| ||||||||||||||    
T  3234061 ttggagaacttatgaaaataagtagaaaaaaacttatgaaaac-tgttataagttgttttcataagttctc 3233992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 51695544 - 51695473
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 83  Q
    ||||||||||| || |||||||||| |||||||||||||  ||| |||| |||||||| ||  |||||||||    
T  51695544 atcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgtttatataagttct 51695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 680524 - 680589
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataa 78  Q
    |||||| |||||||||||||||||| |||||| || ||| |||||||||||||| || ||||||||    
T  680524 atcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttttcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 24347746 - 24347819
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 89  Q
    ||||||||||| |||||||||| |||| || |||||  ||| | ||||||||||||||||||||||||| ||||    
T  24347746 ttggagaacttatgaaaataagctgaatatggcttatgaacctatcataagttgctttcataagttctctgaaa 24347819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 16451139 - 16451211
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    ||||||||||||| ||||||||||| |||||| |||| |  ||| ||||||||||||| ||||||||||||||    
T  16451139 atcttggagaactcgtgaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttctc 16451211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 1893330 - 1893275
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 68  Q
    ||||||||||||||||||||||||| |||||||| ||||   ||||||||||||||    
T  1893330 atcttggagaacttgtgaaaataagctgaaaataacttatgtacatgtcataagtt 1893275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 43279575 - 43279506
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||||||||||||||||| ||||||  |||  ||||||||| || |||||||| |||||    
T  43279575 ttggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattctc 43279506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 12194976 - 12195011
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12194976 ttggagaacttgtgaaaataagttgaaaaaagctta 12195011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 26202052 - 26202174
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagc 114  Q
    ||||||||||| ||||||||||||||||| ||||||  |||  |||||||||||| | |||||| |||| | ||||| | ||  |||   ||||| ||||    
T  26202052 ttggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataaattctagcaaagaatctcacaaa-acttatgtcagc 26202150  T
Q  115 acataaattcaaataagttaatcc 138  Q
    | |||| |||||||||||||||||    
T  26202151 agataagttcaaataagttaatcc 26202174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 12464522 - 12464485
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagctt 50  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  12464522 atcttggagaacttgtgaaaataagctgaaaaaagctt 12464485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 13220453 - 13220525
Alignment:
Q  11 taatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||| |||||| || ||||||||| |||| ||||||  |||| ||||||||||| ||| ||||||||||    
T  13220453 taatcttgg-gaacttatgcaaataagtttaaaacagcttatgaacaagtcataagttgtttttataagttctc 13220525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 18066149 - 18066218
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagtt 81  Q
    ||||||||||||||  ||||||||| |||||||||||||  | | |||||||||| || |||||||||||    
T  18066149 atcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 43530142 - 43530089
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||||||||   ||||||||||||  || ||||||||||||||    
T  43530142 aaataagttgaaaatagcttgtgaacatgtcataatctgttttcataagttctc 43530089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 10285887 - 10285947
Alignment:
Q  19 gagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    |||||||| || |||||||||||||| ||||||   ||||||||||||||  |||||||||    
T  10285887 gagaacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataag 10285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 33941930 - 33941998
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 81  Q
    ||||||||||  || ||| ||||||||||||  ||||||  ||| |||||||||||| |||||||||||    
T  33941930 atcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataagtt 33941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 34652085 - 34652029
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||||||| ||| || |||||||||||||| ||||||   |||||||||||||||    
T  34652085 atcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttg 34652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 35378582 - 35378510
Alignment:
Q  12 aatcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||| | ||| |||||||||| |||||||| ||||  |||| ||||| || || ||||||||||||||    
T  35378582 aatcttggatagcttatgaaaataagctgaaaataacttatgaacaagtcatcagctgttttcataagttctc 35378510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 12289821 - 12289856
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  12289821 ttggagaacttatgaaaataagttgaaaaaagctta 12289856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 16398520 - 16398449
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||| | ||| ||| |||| | ||||||   ||||||||||||||| ||||||| ||||||    
T  16398520 atcttggagaacttgcgtaaaaaaggtgaagacagcttatggacatgtcataagttgttttcatatgttctc 16398449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 38809351 - 38809418
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||| ||| || |||||||||||||| || |||  ||||||||||||| || ||| ||||||||||    
T  38809351 tggagagcttatggaaataagttgaaaacagattattaacatgtcataagctggtttaataagttctc 38809418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 43504772 - 43504848
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaa 89  Q
    |||||||||||||| || ||||||| |||||| |||||| ||||| ||| ||||||| |||||| ||||||| ||||    
T  43504772 atcttggagaacttatggaaataagctgaaaacagcttataaacaagtcgtaagttgttttcatcagttctccgaaa 43504848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 43368734 - 43368683
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||||||||    
T  43368734 tgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataag 43368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 21653102 - 21653163
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttc 74  Q
    |||||||||| ||| |||||||||| |||||||||||||  ||| |||||||||||| ||||    
T  21653102 atcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgtcataagttgatttc 21653163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10358602 - 10358667
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 81  Q
    ||||||||||||||||||||| | |||||   ||||  |||||||||||||||  |||||||||||    
T  10358602 ttggagaacttgtgaaaataaatcgaaaacgacttatgaacatgtcataagttattttcataagtt 10358667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 26473795 - 26473730
Alignment:
Q  19 gagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||| ||| |||||||||||| ||| ||||||| | |||||||||||| || ||||||||| ||||    
T  26473795 gagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctctc 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 42597459 - 42597512
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 66  Q
    |||||||| ||||| || |||||||||||||| |||||| | ||||||||||||    
T  42597459 atcttggataacttatggaaataagttgaaaacagcttatagacatgtcataag 42597512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 45098978 - 45098922
Alignment:
Q  57 atgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccag 113  Q
    ||||||||||||| ||||||| ||||||||||| | | ||| || ||||||||||||    
T  45098978 atgtcataagttgttttcataggttctcggaaacaatctctcaagtgtttatgccag 45098922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 778413 - 778480
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    ||||||| ||| ||||| ||||||||||| | |||| |||| |||| || |||| |||||||||||||    
T  778413 ttggagagcttatgaaagtaagttgaaaacaacttacaaacgtgtcttatgttgttttcataagttct 778480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 9700028 - 9700147
Alignment:
Q  19 gagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacat 118  Q
    |||| ||| |||||||||| |||||| ||||||   ||||||||||| ||| ||||| ||| ||||  ||| ||| ||  || ||||||||| || | ||    
T  9700028 gagagcttatgaaaataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagat 9700127  T
Q  119 aaattcaaataagttaatcc 138  Q
    ||  ||||||||||||||||    
T  9700128 aagctcaaataagttaatcc 9700147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 31875629 - 31875578
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    |||||||||||||||||| |||||   ||||||||||||||| || ||||||    
T  31875629 tgaaaataagttgaaaatggcttatggacatgtcataagttgtttccataag 31875578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 38307683 - 38307750
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagt 80  Q
    ||||||||||| || ||||||||||  |||| |||||||   ||||||||| ||||| ||||||||||    
T  38307683 atcttggagaaattatgaaaataagccgaaagtagcttatgcacatgtcattagttgttttcataagt 38307750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 43045771 - 43045736
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  43045771 ttggagaacttatgaaaataagttgaaaaaagctta 43045736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 25670635 - 25670567
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 81  Q
    |||||||||| |||||||||||||| |||||| |  |||  |||||||||||||||| |||||||||||    
T  25670635 atcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagtt 25670567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 15740445 - 15740390
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    |||||||||||| |||| ||||||  |||||||||||||||| |||||||||||||    
T  15740445 tgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 15740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 30535599 - 30535703
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaa 127  Q
    |||||||||  |||||| ||||||  ||||| |||||||||| ||||||||||||||  ||| ||| ||| || |||||||| ||| | || || |||||    
T  30535599 tgaaaataacctgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactcaaa 30535698  T
Q  128 taagt 132  Q
    |||||    
T  30535699 taagt 30535703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 33678801 - 33678873
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    |||||||| ||||||||||||||||||||||| | || |  ||| |||| |||||||| ||||||||||||||    
T  33678801 atcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataagttctc 33678873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 34035938 - 34036009
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttct 83  Q
    ||||| ||||||||| |||||||||||||||| | ||||  ||| ||||||||||||  |||||||||||||    
T  34035938 atcttagagaacttgcgaaaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttct 34036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 47130834 - 47130803
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaa 44  Q
    ||||||||||||||||||||||||||||||||    
T  47130834 atcttggagaacttgtgaaaataagttgaaaa 47130803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 420384 - 420453
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagc-ttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||| |||||||||||||||||  || ||| |||  |||||||| ||| ||||||||||||||    
T  420384 ttggagaacttatgaaaataagttgaaaaaggctttagaaaactgtcataaattgttttcataagttctc 420453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 11619204 - 11619135
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||| ||||| ||||||||||| ||||||  |||  |||||||||||| |||||||| |||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataaattctc 11619135  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 11048058 - 11048118
Alignment:
Q  23 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    |||| ||| |||||| |||||| ||||||  |||||||||||||||| ||| |||||||||    
T  11048058 acttatgagaataagctgaaaacagcttatgaacatgtcataagttgttttgataagttct 11048118  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 29768671 - 29768635
Alignment:
Q  30 aaaataagttgaaaatagcttaaaaacatgtcataag 66  Q
    |||||||||||||||||||||| | ||||||||||||    
T  29768671 aaaataagttgaaaatagcttatagacatgtcataag 29768635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 47303425 - 47303457
Alignment:
Q  12 aatcttggagaacttgtgaaaataagttgaaaa 44  Q
    |||| ||||||||||||||||||||||||||||    
T  47303425 aatcctggagaacttgtgaaaataagttgaaaa 47303457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 529396 - 529451
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 68  Q
    |||||||||| ||| |||||||| |||||||| ||||||  ||| |||||||||||    
T  529396 atcttggagagcttatgaaaatatgttgaaaacagcttatgaacttgtcataagtt 529451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 9050656 - 9050687
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaa 44  Q
    ||||||||||||||||||||||||| ||||||    
T  9050656 atcttggagaacttgtgaaaataagctgaaaa 9050687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 19719047 - 19719098
Alignment:
Q  33 ataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    ||||| |||||| || |||  |||||||||||||||| ||||||||||||||    
T  19719047 ataagctgaaaacagtttatgaacatgtcataagttgttttcataagttctc 19719098  T

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Target: chr7; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 39279978 - 39280021
Alignment:
Q  8 aaataatcttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    |||| |||||||||||||| |||||||||| |||||| ||||||    
T  39279978 aaattatcttggagaacttttgaaaataagctgaaaaaagctta 39280021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 39967947 - 39968014
Alignment:
Q  19 gagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctcg 85  Q
    |||||||  ||||||||||||||||| ||||||  ||| ||| |||||| || |||||||||||||||    
T  39967947 gagaactaatgaaaataagttgaaaacagcttatgaacaatgccataagctgttttcataagttctcg 39968014  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000005; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 5391910 - 5391968
Alignment:
Q  23 acttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagtt 81  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||| || |||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 29427676 - 29427623
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||||||||||  |||||||||| || || ||||||||||||||    
T  29427676 aaataagttgaaaatagcttatgaacatgtcattaggtgttttcataagttctc 29427623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 39980753 - 39980822
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta-aaaacatgtcataagttgctttcataagttctc 84  Q
    ||||||||||| ||||||||||||||||| ||||||  ||||  |||||||| || ||||||||||||||    
T  39980753 ttggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataagttctc 39980822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 3044304 - 3044252
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttg 69  Q
    |||||| ||| ||||||||||||||||| ||||||  ||||||||||||||||    
T  3044304 tggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttg 3044252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 21367688 - 21367760
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| |||||||||| |||||| |||||   ||| |||||||||| || ||||||||||||||    
T  21367688 atcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctc 21367760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 52619024 - 52619076
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 65  Q
    |||||| ||| |||||||||||||| |||||||||||||  ||||||||||||    
T  52619024 atcttgaagagcttgtgaaaataaggtgaaaatagcttatgaacatgtcataa 52619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 2175876 - 2175833
Alignment:
Q  35 aagttgaaaatagcttaaaaacatgtcataagttgctttcataa 78  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||    
T  2175876 aagttgaaaacagcttacaaacatgtcataagttgttttcataa 2175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 7301360 - 7301391
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaa 44  Q
    ||||||||||||||||||||||||||||||||    
T  7301360 atcttggagaacttgtgaaaataagttgaaaa 7301391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 25925767 - 25925818
Alignment:
Q  17 tggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagtt 68  Q
    |||||| ||| ||||||||||||||||| ||||||  |||||||||||||||    
T  25925767 tggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagtt 25925818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 35696262 - 35696297
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35696262 ttggagaacttgtgaaaataagttgaaaaaagctta 35696297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 37273155 - 37273226
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||||||| || |||||||||||||| | ||||   ||||||||||||||| || |||||| ||||    
T  37273155 atcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 2304292 - 2304202
Alignment:
Q  41 aaaatagcttaaaaacatgtcataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataag 131  Q
    |||| ||||||  ||||||||||||||||||||||||| |||||  ||| ||||||  || ||||||||| || | || | ||||||||||    
T  2304292 aaaacagcttatgaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatgctagtagatcagttcaaataag 2304202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 28240340 - 28240410
Alignment:
Q  14 tcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||| ||||||||  ||||||||||||||||||||||  ||  |||||||||| || |||| |||||||||    
T  28240340 tcttcgagaacttaggaaaataagttgaaaatagctttgaacaatgtcataagctgttttcctaagttctc 28240410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 45541592 - 45541662
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttct 83  Q
    |||||||| ||||| ||| |||||  |||||| ||||||  ||||||||||||| || |||||||||||||    
T  45541592 atcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataagctgttttcataagttct 45541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 42747832 - 42747759
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataa-gttgctttcataagttctc 84  Q
    |||||||| ||||| ||||||||||  ||||| |||||| ||||| |||||||| |||| ||||||||||||||    
T  42747832 atcttggataacttctgaaaataaggagaaaacagcttataaacaatgtcataaagttgttttcataagttctc 42747759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 402591 - 402519
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaac-atgtcataagttgctttcataagttctc 84  Q
    |||||| ||||||||||||| |||| |||||| ||||||  ||| |||||||||| || ||||||| ||||||    
T  402591 atcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcatacgttctc 402519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 3845611 - 3845559
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataa 65  Q
    |||||||||||||| |||||||||| |||||| || ||| ||| |||||||||    
T  3845611 atcttggagaacttatgaaaataagctgaaaaaagattataaaaatgtcataa 3845559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 24085387 - 24085315
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaaca-tgtcataagttgctttcataagttctc 84  Q
    ||||||||||||||||||||||||| |||||| ||| ||  |||| |  |||||| || ||||||||||||||    
T  24085387 atcttggagaacttgtgaaaataagctgaaaacagcgtatgaacagtaccataagctgttttcataagttctc 24085315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 48300514 - 48300478
Alignment:
Q  30 aaaataagttgaaaatagcttaaaaacatgtcataag 66  Q
    |||||||||||||||||||||| | ||||||||||||    
T  48300514 aaaataagttgaaaatagcttatacacatgtcataag 48300478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 50004691 - 50004739
Alignment:
Q  31 aaataagttgaaaatagcttaaaaacatgtcataagttgctttcataag 79  Q
    ||||||| |||||| ||||||| |||||||||||||||| || ||||||    
T  50004691 aaataagctgaaaacagcttaagaacatgtcataagttgtttccataag 50004739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 901948 - 901983
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  901948 ttggagaacttatgaaaataagttgaaaaaagctta 901983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 2152205 - 2152162
Alignment:
Q  35 aagttgaaaatagcttaaaaacatgtcataagttgctttcataa 78  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||    
T  2152205 aagttgaaaacagcttacgaacatgtcataagttgttttcataa 2152162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 30573963 - 30573892
Alignment:
Q  13 atcttggagaacttgtgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| ||  |||| ||||| |||||| ||||||  |||||| ||||| ||| ||||||||||||||    
T  30573963 atcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctc 30573892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 46478713 - 46478748
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaatagctta 51  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  46478713 ttggagaacttatgaaaataagttgaaaaaagctta 46478748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 2796 - 2840
Alignment:
Q  22 aacttgtgaaaataagttgaaaatagcttaaaaacatgtcataag 66  Q
    |||||||||||||||||||||||||||||   |||||||||||||    
T  2796 aacttgtgaaaataagttgaaaatagcttgtgaacatgtcataag 2840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 9671 - 9615
Alignment:
Q  28 tgaaaataagttgaaaatagcttaaaaacatgtcataagttgctttcataagttctc 84  Q
    |||||||||| | |||| ||||||  ||||||| |||||||| ||||||||||||||    
T  9671 tgaaaataagctaaaaacagcttatgaacatgtaataagttgttttcataagttctc 9615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 23655 - 23683
Alignment:
Q  16 ttggagaacttgtgaaaataagttgaaaa 44  Q
    |||||||||||||||||||||||||||||    
T  23655 ttggagaacttgtgaaaataagttgaaaa 23683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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