View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0208-Insertion-9 (Length: 539)
Name: NF0208-Insertion-9
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208-Insertion-9 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] scaffold0006 (1 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0068 (1 HSPs) |
| | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 13525093 - 13524562
Alignment:
| Q |
8 |
aatgtacatgtcattttctacacgtacgtaccacgtctctttttaatcatatattattgactatatcattaagaatatgtttcaatttaacatatgctta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13525093 |
aatgtacatgtcattttctacacgtacgtaccacgtctctttttaatcatatattattgactataccattaagaatatgtttcaatttaacatatgctta |
13524994 |
T |
|
| Q |
108 |
tcatgaaagtaccctttcctaagttcttttccgttatttttagacaacatttgattcctgtttttcaacatcaaaatcagattacgaataaactatatga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13524993 |
tcatgaaagtaccctttcctaagttcttttccgttttttttagacagcatttgattcctgtttttcaacatcaaaatcagattacgaataaactatatga |
13524894 |
T |
|
| Q |
208 |
atagtatttaagaggtgtgactcatatattaaatgtctttaagattttaatttggatagagatttgatgtttgtaccatttaaaagtcttgatcatttta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13524893 |
atagtatttaagaggtgtgactcatatattaaatgtctttaagattttaatttggatagagatttgatgttagtaccatttaaaagtcttgatcatttta |
13524794 |
T |
|
| Q |
308 |
agaggtgtgactcatatattaagtgtctttaagtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaat |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
13524793 |
agaggtgtgactcatatattaaatgtctttaagtcattcaatcaatcccaacatattttatgagcctatttactctttcttcgtcgttgtgtgatgaaat |
13524694 |
T |
|
| Q |
408 |
tgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagat |
507 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13524693 |
tgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctatgcataagaaagat |
13524594 |
T |
|
| Q |
508 |
ggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
13524593 |
agagggatgagctttaaaagtttgcgcacctt |
13524562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Complemental strand, 13614628 - 13614097
Alignment:
| Q |
8 |
aatgtacatgtcattttctacacgtacgtaccacgtctctttttaatcatatattattgactatatcattaagaatatgtttcaatttaacatatgctta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13614628 |
aatgtacatgtcattttctacacgtacgtaccacgtctctttttaatcatatattattgactataccattaagaatatgtttcaatttaacatatgctta |
13614529 |
T |
|
| Q |
108 |
tcatgaaagtaccctttcctaagttcttttccgttatttttagacaacatttgattcctgtttttcaacatcaaaatcagattacgaataaactatatga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614528 |
tcatgaaagtaccctttcctaagttcttttccgttttttttagacagcatttgattcctgtttttcaacatcaaaatcagattacgaataaactatatga |
13614429 |
T |
|
| Q |
208 |
atagtatttaagaggtgtgactcatatattaaatgtctttaagattttaatttggatagagatttgatgtttgtaccatttaaaagtcttgatcatttta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13614428 |
atagtatttaagaggtgtgactcatatattaaatgtctttaagattttaatttggatagagatttgatgttagtaccatttaaaagtcttgatcatttta |
13614329 |
T |
|
| Q |
308 |
agaggtgtgactcatatattaagtgtctttaagtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaat |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
13614328 |
agaggtgtgactcatatattaaatgtctttaagtcattcaatcaatcccaacatattttatgagcctatttactctttcttcgtcgttgtgtgatgaaat |
13614229 |
T |
|
| Q |
408 |
tgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagat |
507 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614228 |
tgagaaaatgatgaattcttttttgtggggtcactcaggatcacatagaaaaggtatacacttgatgtcttgggataaattatctatgcataagaaagat |
13614129 |
T |
|
| Q |
508 |
ggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
13614128 |
agagggatgagctttaaaagtttgcgcacctt |
13614097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 512
Target Start/End: Complemental strand, 26382908 - 26382793
Alignment:
| Q |
397 |
tgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgc |
496 |
Q |
| |
|
|||| ||| ||||| || ||||||||||| || ||||||||||| |||||| | || | |||||||| || ||||||| ||||| || |||||||||| |
|
|
| T |
26382908 |
tgtgatgagattgaaaagatgatgaattcattctggtggggtcaatcaggagctcaaaataaaggtatccattggatgtcatgggacaagttatctatgc |
26382809 |
T |
|
| Q |
497 |
ataagaaagatggagg |
512 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
26382808 |
acaaaaaagatggagg |
26382793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 6956602 - 6956567
Alignment:
| Q |
402 |
tgaaattgagaaaatgatgaattctttttggtgggg |
437 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6956602 |
tgaaatcgagaaaatgatgaattctttttggtgggg |
6956567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 6e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 340 - 539
Target Start/End: Original strand, 13501766 - 13501965
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13501766 |
gtccttcaatcaatcccaacatattttatgagcctatttactctcccttcgtcattgtgtgatgaaattgagaaaatgatgaattctttttggtggggtc |
13501865 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13501866 |
actcaggatcacataggaaaggtatacaccggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaagtttgggcacctt |
13501965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 8725506 - 8725627
Alignment:
| Q |
397 |
tgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgc |
496 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||| || |||| |||||| || || | |||||| || |||| || ||||||||| | ||||||| |
|
|
| T |
8725506 |
tgtgatgaaattgaaagaatgatgaattccttttggcggtgtcattcaggaggtcaaagtagaggtattaactggatttcatgggataaactgtctatgc |
8725605 |
T |
|
| Q |
497 |
ataagaaagatggagggatgag |
518 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
8725606 |
ataagaatgatggaggtatgag |
8725627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 9077393 - 9077514
Alignment:
| Q |
397 |
tgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgc |
496 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||| || |||| |||||| || || | |||||| || |||| || ||||||||| | ||||||| |
|
|
| T |
9077393 |
tgtgatgaaattgaaagaatgatgaattccttttggcggtgtcattcaggaggtcaaagtagaggtattaactggatttcatgggataaactgtctatgc |
9077492 |
T |
|
| Q |
497 |
ataagaaagatggagggatgag |
518 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
9077493 |
ataagaatgatggaggtatgag |
9077514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 438
Target Start/End: Complemental strand, 27503171 - 27503088
Alignment:
| Q |
355 |
ccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggt |
438 |
Q |
| |
|
||||| ||||||||||| |||| || || | ||||| || |||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
27503171 |
ccaacctattttatgagtttattcacactcacgtcgtctttatgtgatgaaattgaaaagatgatgaattctttttggtggggt |
27503088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 8969963 - 8969925
Alignment:
| Q |
402 |
tgaaattgagaaaatgatgaattctttttggtggggtca |
440 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8969963 |
tgaaattgagaagatgatgaattctttctggtggggtca |
8969925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 452
Target Start/End: Original strand, 8086298 - 8086406
Alignment:
| Q |
343 |
cttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcact |
442 |
Q |
| |
|
|||||||| || ||||| || || ||||| || |||||||| | ||||| ||||||| | ||||||| |||||| | |||||||||| ||||||||||| |
|
|
| T |
8086298 |
cttcaatccataccaacttacttcatgagtctgtttactctacaatcgtctttgtgtgataaaattgaaaaaatgtt-aattcttttttgtggggtcact |
8086396 |
T |
|
| Q |
443 |
caggatcaca |
452 |
Q |
| |
|
||| ||||| |
|
|
| T |
8086397 |
gagggtcaca |
8086406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 340 - 539
Target Start/End: Complemental strand, 204797 - 204598
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
204797 |
gtccttcaatcaatcccaacatattttatgagcctatttactctgccttcgtcgttgtgtgatgaaattgagaaaatgatgaattctttttggtggggtc |
204698 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
204697 |
acttaggatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatggagggatgagctttaaaagtttgggcacctt |
204598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 340 - 539
Target Start/End: Original strand, 21503459 - 21503658
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21503459 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcctcgttgtgtgatgaaattgagaaaatgatgaattctttttggtggggtc |
21503558 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21503559 |
actcaggatcacataggaagggtatacactggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaattttgggcacctt |
21503658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 19064911 - 19064821
Alignment:
| Q |
355 |
ccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaa--tgatgaattctttttggtggggtcactca |
444 |
Q |
| |
|
||||| |||||||||||| | |||||||||||| | || ||||||| ||||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
19064911 |
ccaacttattttatgagcatgtttactcttcct-catccttgtgtgatgaaattgaaaaaaaatgatgaactcattttggtggggtcactca |
19064821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 528
Target Start/End: Original strand, 7807980 - 7808148
Alignment:
| Q |
361 |
tattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaa-atgatgaattctttttggtggggtcactcaggatcacatagaaaa |
459 |
Q |
| |
|
||||||||||| |||| ||| |||| | ||| || |||| ||||||||| ||| |||||||| || || |||||||| || || | |||||| | | | |
|
|
| T |
7807980 |
tattttatgagtttattcactattccctagtctttatgtgatgaaattgaaaaagatgatgaactccttctggtggggacattctgaatcacaaaatata |
7808079 |
T |
|
| Q |
460 |
ggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagt |
528 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||| |||||||| | || |||||||| |||||| |
|
|
| T |
7808080 |
tgtatacattggatgttttgggataaattatatatgcacaagaaagacagtggaatgagcttcaaaagt |
7808148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 29131169 - 29131121
Alignment:
| Q |
399 |
tggtgaaattgagaaaatgatgaattctttttggtggggtcactcagga |
447 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| | |||||| |
|
|
| T |
29131169 |
tggtgaaattgaaagaatgatgaattctttttggtggggtaattcagga |
29131121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 4569800 - 4569832
Alignment:
| Q |
412 |
aaaatgatgaattctttttggtggggtcactca |
444 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
4569800 |
aaaatgatgaattctttttggtgggatcactca |
4569832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 419 - 539
Target Start/End: Original strand, 24176235 - 24176355
Alignment:
| Q |
419 |
tgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgag |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24176235 |
tgaattctttttggtggggtcactcaggatcacataggaaaggtatacactggatgtcttgggataaattatctatgcacaagaaagatggagggatgag |
24176334 |
T |
|
| Q |
519 |
ctttaaaagtttgggcacctt |
539 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24176335 |
ctttaaaagtttgggcacctt |
24176355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 340 - 528
Target Start/End: Original strand, 32095579 - 32095767
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| |||| |||||||| ||||| |||||| ||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
32095579 |
gtccttcagtctataccaacctatttcatgagtttattcactcttccctcgtctctgtgtgatgaaattgaaaaaatgattaactccttttggtggggtc |
32095678 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagt |
528 |
Q |
| |
|
| || || ||| ||| | |||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||||| |||||| |
|
|
| T |
32095679 |
attcgggctcaagtaggagcggtatacattggatgtcttgggataaattatcaatgcataaaaacgatggaggtatgagcttcaaaagt |
32095767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 343 - 526
Target Start/End: Complemental strand, 6975 - 6792
Alignment:
| Q |
343 |
cttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcact |
442 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||| ||| |||||||| |||||||| |||||||| ||| |||||| |
|
|
| T |
6975 |
cttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgtgtgatgagattgagaagatgatgaactctttttgttggcgtcact |
6876 |
T |
|
| Q |
443 |
caggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa |
526 |
Q |
| |
|
|||||||| | | ||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6875 |
caggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgagctttaaaa |
6792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 343 - 526
Target Start/End: Original strand, 21706935 - 21707118
Alignment:
| Q |
343 |
cttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcact |
442 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| ||||||| |||||||| ||| |||||||| |||||||| |||||||| ||| |||||| |
|
|
| T |
21706935 |
cttcaatcaattccaacgtattttatgagcttatttactctaccttcgttgttgtgtgatgagattgagaagatgatgaactctttttgttggcgtcact |
21707034 |
T |
|
| Q |
443 |
caggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa |
526 |
Q |
| |
|
|||||||| | | ||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21707035 |
caggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgagctttaaaa |
21707118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 16984003 - 16984035
Alignment:
| Q |
406 |
attgagaaaatgatgaattctttttggtggggt |
438 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
16984003 |
attgagaaaatgatgaattccttttggtggggt |
16984035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 343 - 526
Target Start/End: Original strand, 48211949 - 48212132
Alignment:
| Q |
343 |
cttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcact |
442 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||| ||| |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
48211949 |
cttcaatcaattccaacgtattttatgagcttatttactctacctttgtcgttgtgtgatgagattgagaagatgatgaactctttttggtggggtcact |
48212048 |
T |
|
| Q |
443 |
caggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa |
526 |
Q |
| |
|
|||||||| | | ||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
48212049 |
caggatcaaacaagaaaggaatacattggatgtcttgggacaaattatctatgcataaaaaagatggaggtatgtcctttaaaa |
48212132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 346 - 526
Target Start/End: Complemental strand, 46389504 - 46389324
Alignment:
| Q |
346 |
caatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcag |
445 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||||| |||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
46389504 |
caatcaattccaacgtattttatgagcttatttactctaccttcgtcgttgtgtgatgagattgagaagatgatgaactctttttggtggggtcacttag |
46389405 |
T |
|
| Q |
446 |
gatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaa |
526 |
Q |
| |
|
||||| | | ||||| ||||| ||||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||| |
|
|
| T |
46389404 |
gatcaaacaagaaaggaatacattggatgtcttgggacaaattatctattcttaaaaaagatggaggtatgagctttaaaa |
46389324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 528
Target Start/End: Original strand, 45420049 - 45420231
Alignment:
| Q |
346 |
caatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcag |
445 |
Q |
| |
|
||||| || ||||| |||||||||||| | || || || ||||| || | |||| ||||||||| ||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
45420049 |
caatctattccaacttattttatgagcttgttcacgctaccttcttctctttgtgatgaaattgaaaaaatgatgaactctttctggtggggtcattcag |
45420148 |
T |
|
| Q |
446 |
gatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagt |
528 |
Q |
| |
|
||||||||| |||||| || ||| || || | | ||||||| | ||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
45420149 |
gatcacataaaaaaggaattcactggttgccataggataaactgtctatgcataaaaaggatggaggtatgagctttaaaagt |
45420231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 17779500 - 17779391
Alignment:
| Q |
343 |
cttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcact |
442 |
Q |
| |
|
|||||||| || ||||| || || ||||| || |||||||| || ||||| ||||||| ||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
17779500 |
cttcaatccattccaacctacttcatgagtctgtttactctaccatcgtctttgtgtgatgaaattgaaaaaatgttaaattctttttggtggggtcact |
17779401 |
T |
|
| Q |
443 |
caggatcaca |
452 |
Q |
| |
|
|||| ||||| |
|
|
| T |
17779400 |
cagggtcaca |
17779391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 512
Target Start/End: Complemental strand, 53709802 - 53709630
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||| || || || ||||| |||||||| ||||| ||| | || || || | |||| ||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
53709802 |
gtccttcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgtgatgagattgacaagatgatgaattcattctggtggggtc |
53709703 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagg |
512 |
Q |
| |
|
| ||| || | || | |||||||| || ||||||| ||||| | ||||||||||| || ||||||||||| |
|
|
| T |
53709702 |
attcaagagctcaaaataaaggtatccattggatgtcatgggacaggttatctatgcacaaaaaagatggagg |
53709630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 397 - 539
Target Start/End: Complemental strand, 53688 - 53546
Alignment:
| Q |
397 |
tgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgc |
496 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| ||||||||||||||||| || |||| ||||| ||||| || | || |||||| |||| ||||||| |
|
|
| T |
53688 |
tgtgatgaaattgaaaaaatgttgaattctttctggtggggtcactcaggtgcaaataggaaaggaatacattggttttcatgggatgaattgtctatgc |
53589 |
T |
|
| Q |
497 |
ataagaaagatggagggatgagctttaaaagtttgggcacctt |
539 |
Q |
| |
|
|||| |||||| |||| ||| ||||||||| ||| || ||||| |
|
|
| T |
53588 |
ataaaaaagattgaggtatgggctttaaaaatttaggaacctt |
53546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 528
Target Start/End: Complemental strand, 23265924 - 23265790
Alignment:
| Q |
394 |
ttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatcta |
493 |
Q |
| |
|
||||||| ||||||||| || |||||||||||||||||||||||||| || || ||| | | ||| |||||| |||||||||||||||||||| | |
|
|
| T |
23265924 |
ttgtgtgatgaaattgaaaagatgatgaattctttttggtggggtcattctggttcaaacaagcgaggaatacactggatgtcttgggataaattagtaa |
23265825 |
T |
|
| Q |
494 |
tgcataagaaagatggagggatgagctttaaaagt |
528 |
Q |
| |
|
||||||| || |||||||| |||||| | |||||| |
|
|
| T |
23265824 |
tgcataaaaatgatggaggtatgagcctcaaaagt |
23265790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 440
Target Start/End: Complemental strand, 25596405 - 25596367
Alignment:
| Q |
402 |
tgaaattgagaaaatgatgaattctttttggtggggtca |
440 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
25596405 |
tgaaattgagaagatgatgaactctttttggtggggtca |
25596367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 26368940 - 26369025
Alignment:
| Q |
367 |
atgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtcactcaggatcaca |
452 |
Q |
| |
|
||||| || ||||||| || ||||| ||||||| ||||||||| |||||| | |||||||||| ||||||||||||||| ||||| |
|
|
| T |
26368940 |
atgagtctgtttactcaaccatcgtcattgtgtgatgaaattgaaaaaatgttaaattcttttttgtggggtcactcagggtcaca |
26369025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 512
Target Start/End: Original strand, 33348417 - 33348589
Alignment:
| Q |
340 |
gtccttcaatcaatcccaacatattttatgagcctatttactcttccttcgtcgttgtgtggtgaaattgagaaaatgatgaattctttttggtggggtc |
439 |
Q |
| |
|
|||||||| || || || ||||| |||||||| ||||| ||| | || || || | |||| ||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
33348417 |
gtccttcagtctattcccacatactttatgagtctattcactttaccgtcatctctttgtgatgagattgaaaagatgatgaattcattctggtggggtc |
33348516 |
T |
|
| Q |
440 |
actcaggatcacatagaaaaggtatacaccggatgtcttgggataaattatctatgcataagaaagatggagg |
512 |
Q |
| |
|
| |||||| | || | |||||||| || ||||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
33348517 |
aatcaggagctcaaaataaaggtatccattggatgtcatgggacaagttatctatgcacaaaaaagatggagg |
33348589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 24449815 - 24449760
Alignment:
| Q |
475 |
tcttgggataaattatctatgcataagaaagatggagggatgagctttaaaagttt |
530 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||||| ||||||| ||||||||| |
|
|
| T |
24449815 |
tcttgggataaattatccatgcataaaaatgatggaggaatgagctataaaagttt |
24449760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 21272884 - 21272851
Alignment:
| Q |
403 |
gaaattgagaaaatgatgaattctttttggtggg |
436 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
21272884 |
gaaattgagaaaatcatgaattctttttggtggg |
21272851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 8689149 - 8689193
Alignment:
| Q |
397 |
tgtggtgaaattgagaaaatgatgaattctttttggtggggtcac |
441 |
Q |
| |
|
|||| ||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
8689149 |
tgtgatgatattgagaaaatgatgaaatatttttggtggggtcac |
8689193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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