View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0208_high_2 (Length: 431)
Name: NF0208_high_2
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Complemental strand, 51006813 - 51006427
Alignment:
| Q |
30 |
tttaagcagctcaaaatctattttcgagggaaattaattgttaagtgaacatatattaaaaaataaggtaaaataccttggagaactaggtagttgtcat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51006813 |
tttaagcagctcaaaatctattttcgagggaaattagttgttaagtgaacatatattaaaaa-taaggtaaaataccttggagaactaggtagttgtcat |
51006715 |
T |
|
| Q |
130 |
tgttgtgatcatataaaaacaatttaaaatttacatagatttcccaaccaggatgaagtgagcttgattcttccaatgccaagtatagtgaaatatgatc |
229 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51006714 |
tgttttgatcatatacaaacaatttaaaatttacatagatttcccaaccaggatgaagtgagcttgattcttccaatgccaagtatagtgaaatatgatc |
51006615 |
T |
|
| Q |
230 |
ctttacattcttgcttttgtttccacttgggtacaaaactaacttcctgtgaggtataaatacatttttaacatattcattctgaaatgaaccaaaatta |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51006614 |
ctttacattcttgcttttgtttccacttgggtacaaaactaacttcctgtgaggtataaatacatttttaacatattcattctgaaatggaccaaaatta |
51006515 |
T |
|
| Q |
330 |
tcattcatgaaattatttttatcaaaaacatatactataatgtatattgtataccatttgtggcctccagcttcaaacttccccgattcat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51006514 |
tcattcatgaaattatttttatcaaaaacata---tataatgtatattgtataccatttgtggcctccagcttcaaacctccccgattcat |
51006427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 211 - 420
Target Start/End: Original strand, 38741023 - 38741229
Alignment:
| Q |
211 |
agtatagtgaaatatgatcctttacattcttgcttttgtttccacttgggtacaaaactaacttcctgtgaggtataaatacatttttaacatattcatt |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
38741023 |
agtatagtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgaggtttaaacacatttttaacatattcatt |
38741122 |
T |
|
| Q |
311 |
c----tgaaat-ga-accaaaattatcattcatgaaatta-tttttatcaaaaacatatactataatgtatattgtataccatttgtggcctccagcttc |
403 |
Q |
| |
|
| |||| | || ||||||||||| ||||||||||||| ||||||||| |||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
38741123 |
cactatgaattagagaccaaaattataattcatgaaattattttttatcaggaacatatatta----------tgtataccatttgtagcctccagcttc |
38741212 |
T |
|
| Q |
404 |
aaacttccccgattcat |
420 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
38741213 |
aaattttcccgattcat |
38741229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2231 times since January 2019
Visitors: 2399