View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208_high_4 (Length: 252)
Name: NF0208_high_4
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 19198934 - 19199186
Alignment:
| Q |
1 |
tcatggtaaatactacatctagttatcacacaaacattaagcataccctacaagagagaagtgaaagagagattagctttgcaagacttcattcccaata |
100 |
Q |
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| T |
19198934 |
tcatggtaaatactacatctagttatcacacaaacattaagcataccctacaagagagaagtgaaagagagattagctttgcaagacttcattcccaata |
19199033 |
T |
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| Q |
101 |
gcattccccattatatattggttcggaaaccaccaatgagagaaatga----aaggggaaaaaggtaaccaaacattacctttgaaagactgagttttct |
196 |
Q |
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| T |
19199034 |
gcattccccattatatattggttcggaaaccaccaatgagagaaatgaaggtaaggggaaaaaggtaaccaaacattacctttgaaagactgagttttct |
19199133 |
T |
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| Q |
197 |
gcataggtattttccgatcccttgtggcaccaaaatcagctctgtgctcctcc |
249 |
Q |
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| T |
19199134 |
gcataggtattttccgatcccttgtggcaccaaaatcagctttgttctcctcc |
19199186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 19202992 - 19203079
Alignment:
| Q |
162 |
taaccaaacattacctttgaaagactgagttttctgcataggtattttccgatcccttgtggcaccaaaatcagctctgtgctcctcc |
249 |
Q |
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| T |
19202992 |
taaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatcccttgtggcgccaagatcagatttgttctcctcc |
19203079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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