View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208_high_5 (Length: 216)
Name: NF0208_high_5
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 19198825 - 19198669
Alignment:
| Q |
31 |
catgcatggttattgaagagttttagaaatgaagtctagacaattacacataagagcatgcaatcagcagcctagtaagttcagaaaaacgagggataaa |
130 |
Q |
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| T |
19198825 |
catgcatggttattgaagagttttagaaatgaagtctagacaattacacataagagcatgcgatcagcagcctagtcagttcagaaaaacgagggataaa |
19198726 |
T |
|
| Q |
131 |
atttcatttgaccttgtgtaaaaactgtcttgaccattatcagcagagaagaaaaag |
187 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19198725 |
atttcatttgacctcgtgtaaaaactgtcttgaccattttcagcagagaagaaaaag |
19198669 |
T |
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