View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208_low_1 (Length: 456)
Name: NF0208_low_1
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 427
Target Start/End: Original strand, 42655768 - 42656190
Alignment:
| Q |
6 |
agaacagaacgagaatctgatcacaaattcatcacccgcactcatgtaggaaaatttcattttaatttggagagaaaagcatatcactannnnnnnnnnn |
105 |
Q |
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| T |
42655768 |
agaaaagaacgagaatctgatcacaaattcatcacccgcacttatgtaggaaaatttcattttaatttggagagaaaagcatatcactgttttttttttt |
42655867 |
T |
|
| Q |
106 |
nnna-aaacagtaaatatcaatggaatctctcaaggcaaaattgacacgtgcccaacaattttctgtcataacaaaacaaaacggacaaaataagagcgg |
204 |
Q |
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| T |
42655868 |
tttttaaacaataaatatcaatggaatctctcaaggcaaaattgacacgtgcccaacaattttctgtcataacaaaacaaaacggacaaaataatagcgg |
42655967 |
T |
|
| Q |
205 |
tgattttgttaacatctgtggaatctaatctaaggtttgagagtaaagttaaataggccagggaaatatgcaattagaaatattagaaaaataacaaaaa |
304 |
Q |
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| T |
42655968 |
tgattttgttaacatctgtggaatctaatctaaggtttgagagtaaagttaaataggccagggaaatatgtaattagaaatattagaaaaataacaaaaa |
42656067 |
T |
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| Q |
305 |
ggcgagattccttttgctaaaattctacctgatgaaaatctacatagattattatatttatgtgactactatgtatttatgttatatagagtacaagaat |
404 |
Q |
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| T |
42656068 |
ggcgagattccttttgctaaaattctacctgatgaaaatctacatagattattatatttatgtgactactatgtatttatgttatatagagtacaagaat |
42656167 |
T |
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| Q |
405 |
atatattgataatgagccctgtt |
427 |
Q |
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| T |
42656168 |
atatattgataatgagccctgtt |
42656190 |
T |
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