View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0208_low_4 (Length: 254)
Name: NF0208_low_4
Description: NF0208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0208_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 33628953 - 33628727
Alignment:
| Q |
28 |
ttctgatcattagtaactgttgaagcaaggcactgataattaagcatattgatcatgattttgaaagttttgttggtggacaaaggtgatttcaaaatca |
127 |
Q |
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| T |
33628953 |
ttctgatcattagtaactgttgaagcaaggcactgataattaagcatattgatcatgattttgaaagttttgttggtggacaaaggtgatttcaaaatca |
33628854 |
T |
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| Q |
128 |
ctcttgtatatgcatcagatacttttagttcctaaatctctagcttcatggtgtagttcttatcaagcaattgacctaaacttgtcagattgcttgaaat |
227 |
Q |
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| T |
33628853 |
ctcttgtatatgcatcagatacttttagttcctaaatctctagcttcatggtgtagttcttatcaagcaattgacctaaacttgtcagattgcttgaaat |
33628754 |
T |
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| Q |
228 |
agaaggaacatatagcacatcactaat |
254 |
Q |
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| T |
33628753 |
agaaggaacatatagcacatcactaat |
33628727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 6132924 - 6132861
Alignment:
| Q |
25 |
cagttctgatcattagtaactgttgaagcaaggcactgataattaagcatattgatcatgattt |
88 |
Q |
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| T |
6132924 |
cagttctaatcattagtaactgttgaagcaaggcactaatgatcaagaatactgatcatgattt |
6132861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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