View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0209_low_1 (Length: 641)
Name: NF0209_low_1
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0209_low_1 |
 | |
|
| [»] scaffold0536 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0536 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 207 - 634
Target Start/End: Original strand, 6497 - 6924
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc |
6596 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6597 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta |
6696 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6697 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
6796 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaataaaaaagtatgctggagagtttggggataaggctaaac |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6797 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaatcaaaaagtatgctcgagagtttggggataaggctaaac |
6896 |
T |
|
| Q |
607 |
atgcggctcaagaaggtggttcatctca |
634 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
6897 |
atgcggctcaagaaggtggttcatctca |
6924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 242 - 634
Target Start/End: Original strand, 10514 - 10906
Alignment:
| Q |
242 |
aaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattcc |
341 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || || ||||||||| | ||||||| | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10514 |
aaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattcc |
10613 |
T |
|
| Q |
342 |
actgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataacacaggtgcgacgaattg |
441 |
Q |
| |
|
|| || ||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||| || ||||| | |||| |
|
|
| T |
10614 |
accgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataacgcaagtgcgggggattg |
10713 |
T |
|
| Q |
442 |
gggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgat |
541 |
Q |
| |
|
||| || ||||| |||| |||||| | | | |||||||||||||| ||||||| |||| ||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
10714 |
ggggggaagtgggtgcagtagagtggtgcttagttggtattggggagaaagagaagttggtcgggagggatggtattgagaaggttgtgaagagattgat |
10813 |
T |
|
| Q |
542 |
ggatggtggtgacgaagctgagaaaataaaaaagtatgctggagagtttggggataaggctaaacatgcggctcaagaaggtggttcatctca |
634 |
Q |
| |
|
||| | || | | |||||||| ||| | | ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
10814 |
ggacaatagttatgtagctgagataatcagacgacatgctcgagagtttggggataaggctaaatgtgcggctcaggaaggtggttcatctca |
10906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 6391 - 6450
Alignment:
| Q |
101 |
actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6391 |
actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
6450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 207 - 639
Target Start/End: Original strand, 48912331 - 48912763
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||| ||||||||| ||| | |
|
|
| T |
48912331 |
tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg |
48912430 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
48912431 |
tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagtttta |
48912530 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||||| ||| || ||| | || ||||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
48912531 |
caatgagaagttgataacacaggtgcatgggattggggtggaggtcggtgcaacggaatggagcacaactggtattggggaaagagagaaggtggtttgg |
48912630 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaataaaaaagtatgctggagagtttggggataaggctaaac |
606 |
Q |
| |
|
||||||| ||||||||||| ||||| | |||||||||| ||||||| |||||||||||||| | | | ||||| ||||||||||||| || ||||||| |
|
|
| T |
48912631 |
agggataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaac |
48912730 |
T |
|
| Q |
607 |
atgcggctcaagaaggtggttcatctcactcga |
639 |
Q |
| |
|
|||| | ||||||||||||||||||| |||| |
|
|
| T |
48912731 |
atgcaattaaagaaggtggttcatctcattcga |
48912763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 207 - 634
Target Start/End: Complemental strand, 48958337 - 48957910
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| ||||||||| || | |
|
|
| T |
48958337 |
tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg |
48958238 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
48958237 |
tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattcta |
48958138 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
|||||| ||||||||||| | |||||| |||||||||||| ||| || ||| | |||||| || || ||| ||| ||||| | ||||| | ||| | |
|
|
| T |
48958137 |
caatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgtgtaaacggttttgaggagaaacagaagattgtgagt |
48958038 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaataaaaaagtatgctggagagtttggggataaggctaaac |
606 |
Q |
| |
|
| |||||||| || |||||||||| |||||||||||| |||||||| ||||||||| |||| ||| || |||| |||||| || || ||||||| || |
|
|
| T |
48958037 |
aaagatagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacac |
48957938 |
T |
|
| Q |
607 |
atgcggctcaagaaggtggttcatctca |
634 |
Q |
| |
|
|| | |||||||||||| |||||||| |
|
|
| T |
48957937 |
gagctgttcaagaaggtggatcatctca |
48957910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 207 - 568
Target Start/End: Complemental strand, 48965519 - 48965161
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| || ||| ||||| |||||||| |||| |
|
|
| T |
48965519 |
tggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctg |
48965423 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| ||||| || ||||||||| |||| |||||||||||||| || ||||| || ||||||||||| || |
|
|
| T |
48965422 |
tgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattcta |
48965323 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
||| ||||| |||||||| | |||||| | ||||| |||| || || ||| | || ||| ||| |||||| ||| || ||||||||| ||||| | |
|
|
| T |
48965322 |
caacgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgtttgactggttttgaagaaagagagaagctggtgagt |
48965223 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctgagaaaat |
568 |
Q |
| |
|
|| ||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
48965222 |
agtgatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaat |
48965161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 48961486 - 48961267
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || | |||||||||||||||||| |||| ||| ||||| |||||||||||||| || |||||| ||| | |
|
|
| T |
48961486 |
tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg |
48961387 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaa--ttccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattt |
404 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||| ||||||||| |||||||||| | || ||||| || ||||| || || ||||||||||| |
|
|
| T |
48961386 |
tgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattc |
48961287 |
T |
|
| Q |
405 |
tacaatgaaaagttgataac |
424 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
48961286 |
tacaacgagaagttgataac |
48961267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 319 - 433
Target Start/End: Complemental strand, 48974199 - 48974085
Alignment:
| Q |
319 |
tgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagtt |
418 |
Q |
| |
|
|||| ||||| |||||||| ||||| || || || ||||||||||||||||| |||||||||||||| ||||| | |||||||| ||||| || ||||| |
|
|
| T |
48974199 |
tgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagtt |
48974100 |
T |
|
| Q |
419 |
gataacacaggtgcg |
433 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
48974099 |
gataactcaggtgcg |
48974085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 48912225 - 48912284
Alignment:
| Q |
101 |
actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
160 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
48912225 |
actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc |
48912284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 48951295 - 48951252
Alignment:
| Q |
348 |
gaggctgttagtgcaggggttccgatgatcacgtggccggtgca |
391 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48951295 |
gaggctattagtgtaggggttccgatgatcacgtggccggtgca |
48951252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 48958443 - 48958384
Alignment:
| Q |
101 |
actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
160 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
48958443 |
actttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcc |
48958384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 48974383 - 48974349
Alignment:
| Q |
123 |
atagaagcatcgggtcacaaattcatatgggttgt |
157 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
48974383 |
atagaagcatcgggtcaccaattcatatgggttgt |
48974349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 207 - 562
Target Start/End: Complemental strand, 13448553 - 13448201
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| || | |
|
|
| T |
13448553 |
tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcag |
13448457 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
|||| | |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| || |
|
|
| T |
13448456 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta |
13448357 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
|||||| || |||||||||| | ||| ||||||| || | || || ||| | || ||| || | | |||| | | ||||||| ||||| | ||| | |
|
|
| T |
13448356 |
caatgagaaactgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagttagtgagc |
13448257 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctga |
562 |
Q |
| |
|
|| ||||| || ||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
13448256 |
agagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctga |
13448201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 207 - 544
Target Start/End: Complemental strand, 13440390 - 13440056
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || || ||||||||| |||| ||||||||| |||||||||| ||| ||||||||| || | |
|
|
| T |
13440390 |
tggttgccaaagggattcgaagagagaaacattag---gaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcgg |
13440294 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
|||| | |||||||||||||| ||| |||| || | ||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| || |
|
|
| T |
13440293 |
tggggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta |
13440194 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
||| || || || ||||||| | ||| ||||||| |||| || || ||| | || ||| || | |||| ||| ||||||||||||| ||||| | |
|
|
| T |
13440193 |
caacgagaaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagttggtgagc |
13440094 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatgga |
544 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13440093 |
agggataacatagagaaggctgtgaggagattgatgga |
13440056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 207 - 560
Target Start/End: Complemental strand, 13455024 - 13454674
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||| |||| ||||||||||| |||||||||||||| |||||||||| ||| ||||| ||| || | |
|
|
| T |
13455024 |
tggttgccgaagggatttgaagagaaaaacatcg---agaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcag |
13454928 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
|||| | |||||||||||||| ||| |||| || | || ||||||||||| || ||||| ||||| |||||||| || || ||||| ||||| || |
|
|
| T |
13454927 |
tggggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattcta |
13454828 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
||| || || | |||||||| || ||| ||||||| | | || || ||| | || ||| || ||| |||| ||| ||||||||||||| ||||| | |
|
|
| T |
13454827 |
caacgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagttggtgagc |
13454728 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagct |
560 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
13454727 |
aaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagct |
13454674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 13448655 - 13448600
Alignment:
| Q |
105 |
tacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
160 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13448655 |
tacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc |
13448600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 424
Target Start/End: Original strand, 12590192 - 12590375
Alignment:
| Q |
241 |
gaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattc |
340 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| || ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
12590192 |
gaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattc |
12590291 |
T |
|
| Q |
341 |
cactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataac |
424 |
Q |
| |
|
| || ||||| |||||||| || ||||||||||||| ||||| || | || ||||| ||||||||||| ||||||||||| |
|
|
| T |
12590292 |
cgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgataac |
12590375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 246 - 412
Target Start/End: Original strand, 12483492 - 12483658
Alignment:
| Q |
246 |
aagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactg |
345 |
Q |
| |
|
|||| |||||| || || ||||| ||||| ||||| || |||||||||||||| || |||||||| |||||||| || ||||| |||||||| || |
|
|
| T |
12483492 |
aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg |
12483591 |
T |
|
| Q |
346 |
ttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatga |
412 |
Q |
| |
|
| || || |||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
12483592 |
tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatga |
12483658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 12483345 - 12483403
Alignment:
| Q |
102 |
ctttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
160 |
Q |
| |
|
|||||||| ||| |||| || ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
12483345 |
ctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcc |
12483403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 207 - 467
Target Start/End: Original strand, 12641467 - 12641727
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||| || |||||||||||||||||| | | ||| ||||| ||||| || ||||||| ||||| |||||||| |||||||| |||||| |||| |
|
|
| T |
12641467 |
tggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctg |
12641566 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
||||||| || ||||||||||| |||| ||| ||| || |||||||||||||||||| |||| |||||||||||||| ||||| |||||||| || || |
|
|
| T |
12641567 |
tgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttcta |
12641666 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtgg |
467 |
Q |
| |
|
||||| ||| ||||||| |||||| | |||||||||| |||||| ||| | |||||| |
|
|
| T |
12641667 |
taatgagaagctgataactgttgtgcgaaggattggggtggaggtgggtgcaacagagtgg |
12641727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 12641751 - 12641820
Alignment:
| Q |
491 |
agagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagct |
560 |
Q |
| |
|
|||||| |||||| | || ||||||| ||||| |||||||||||||||||||| | |||||| |||||| |
|
|
| T |
12641751 |
agagaaagtggtgagtagacatagtatagagaaagctgtgaggagattgatggacgatggtgatgaagct |
12641820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 249 - 562
Target Start/End: Complemental strand, 12540836 - 12540523
Alignment:
| Q |
249 |
aagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactgttg |
348 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| ||| ||||||||| || ||||| | |||||||| ||||||||| | || || | ||| | |
|
|
| T |
12540836 |
aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtag |
12540737 |
T |
|
| Q |
349 |
aggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataacacaggtgcgacgaattggggtggt |
448 |
Q |
| |
|
|||||||| |||| || ||||| ||||| ||||||||| || ||||| || || | ||| || || | ||||||||||| ||| ||||||| || | |
|
|
| T |
12540736 |
aggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtaga |
12540637 |
T |
|
| Q |
449 |
ggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtggggagggatagtattgagaaggctgtgaggagattgatggatggt |
548 |
Q |
| |
|
|| || ||| | || ||| || ||| ||||| |||||||||| ||||| |||| || || ||| | || ||||||||| |||||||||||||||||||| |
|
|
| T |
12540636 |
agtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagttggttggcagagatggcatagagaaggctatgaggagattgatggatggt |
12540537 |
T |
|
| Q |
549 |
ggtgacgaagctga |
562 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
12540536 |
ggttatgaagctga |
12540523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 28385520 - 28385438
Alignment:
| Q |
211 |
tgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagc |
296 |
Q |
| |
|
||||||||||||| || |||||||| || ||||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| |
|
|
| T |
28385520 |
tgccaaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagc |
28385438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 207 - 544
Target Start/End: Original strand, 3417516 - 3417850
Alignment:
| Q |
207 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg |
306 |
Q |
| |
|
|||||||| |||||||| || |||||||| || ||||||||| |||||||| ||||||||||||| ||||| ||| ||| ||||||||| || | |
|
|
| T |
3417516 |
tggttgccgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcgg |
3417612 |
T |
|
| Q |
307 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta |
406 |
Q |
| |
|
| || | |||||||| ||||||||| |||| || ||||||||||||| ||||||| ||||| ||||| |||||||||| || ||||| ||||| | |
|
|
| T |
3417613 |
tagggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgtt |
3417712 |
T |
|
| Q |
407 |
caatgaaaagttgataacacaggtgcgacgaattggggtggtggtgggggcagctgagtggagttcaactggtattggggagagagagaaggtggtgggg |
506 |
Q |
| |
|
|||||| || | |||||||| || ||| ||||||| |||| || || ||| | || ||| || || |||||||||||||||| ||||| ||||| | |
|
|
| T |
3417713 |
caatgagaaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagttggtgagc |
3417812 |
T |
|
| Q |
507 |
agggatagtattgagaaggctgtgaggagattgatgga |
544 |
Q |
| |
|
|| ||| || |||||||| |||||||||||||||| |
|
|
| T |
3417813 |
agagatgacatagagaaggcaatgaggagattgatgga |
3417850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 3417432 - 3417468
Alignment:
| Q |
123 |
atagaagcatcgggtcacaaattcatatgggttgttc |
159 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3417432 |
atagaagcatcgggtcacccattcatatgggttgttc |
3417468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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