View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0209_low_2 (Length: 487)
Name: NF0209_low_2
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0209_low_2 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 57 - 487
Target Start/End: Original strand, 48593045 - 48593475
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593045 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48593144 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593145 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48593244 |
T |
|
| Q |
257 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
356 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48593245 |
gtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaag |
48593344 |
T |
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| Q |
357 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggggcggttgtcctggtatgcctttggcccta |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
48593345 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggcccta |
48593444 |
T |
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| Q |
457 |
cgtcaattacccactgtaattggtgctttgg |
487 |
Q |
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| T |
48593445 |
cgtcaattacccactgtaattggtgctttgg |
48593475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 57 - 487
Target Start/End: Original strand, 48597656 - 48598086
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597656 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48597755 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
256 |
Q |
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| T |
48597756 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
48597855 |
T |
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| Q |
257 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
356 |
Q |
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| T |
48597856 |
gtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaag |
48597955 |
T |
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| Q |
357 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggggcggttgtcctggtatgcctttggcccta |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
48597956 |
gtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggcccta |
48598055 |
T |
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| Q |
457 |
cgtcaattacccactgtaattggtgctttgg |
487 |
Q |
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| T |
48598056 |
cgtcaattacccactgtaattggtgctttgg |
48598086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 57 - 487
Target Start/End: Complemental strand, 23231213 - 23230774
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| ||||||||||| | ||||||||||||||| ||||| |
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| T |
23231213 |
atcagaactgtttaacaatccaagggtgttgaaaaaagctcaagaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtcca |
23231114 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatg |
256 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
23231113 |
aaccttccttatatacatgccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatggaagattgtgttgttgatg |
23231014 |
T |
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| Q |
257 |
gtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaag |
356 |
Q |
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|||| ||| |||| ||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| |||||||| |
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| T |
23231013 |
gtaaaatggttccaaaaggatcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaag |
23230914 |
T |
|
| Q |
357 |
gtttttagaaaacaaag---------atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggggcggttgtcctggtatgcct |
447 |
Q |
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||||||||||||||||| |||| || ||||||||||| || | ||||||| | |||||||||||||||||| | || || ||||||||||| |
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| T |
23230913 |
gtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaaggagaggctgccctggtatgccg |
23230814 |
T |
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| Q |
448 |
ttggccctacgtcaattacccactgtaattggtgctttgg |
487 |
Q |
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|||||| | || ||||| ||||| ||| | || ||||||| |
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| T |
23230813 |
ttggccatgcgccaattgcccaccgtagtcggggctttgg |
23230774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 59 - 453
Target Start/End: Complemental strand, 23223466 - 23223063
Alignment:
| Q |
59 |
cagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaa |
158 |
Q |
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|||||||||| |||||||||| || ||||| ||||||||||| |||||||| | | | | | ||||||||||| || ||||||| |||| |||||| |
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| T |
23223466 |
cagaactgttcaacaatccaatagtactgaagaaagcacaagaagaggtggagagaataatagggaaggaaagactagtatgtgaagcagacattccaaa |
23223367 |
T |
|
| Q |
159 |
ccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggt |
258 |
Q |
| |
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||||||||||||||| || || |||||||||||| |||||||||| || || ||||||||||| ||||| |||| ||||||||||||| ||||| |
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| T |
23223366 |
ccttccttatatacaagccattataaaagaaacattgaggcttcacccaccactaccgatgattgctaggaaaggaacaaaagattgtgtggtcgatggg |
23223267 |
T |
|
| Q |
259 |
aacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggt |
358 |
Q |
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|| ||||| ||||||||||| |||||||| |||||||||||||| | ||||||| |||||| ||| |||||||| |||||||||| || ||||||| |
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| T |
23223266 |
aaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggt |
23223167 |
T |
|
| Q |
359 |
ttttagaa-----aacaaa----gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggggcggttgtcctggtatgccttt |
449 |
Q |
| |
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|||||||| || | | || || || || |||||||| | |||||||||||||||||||||||||||||| | ||||| || || |||||||| |
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| T |
23223166 |
ttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggagaggttgcccggggatgccttt |
23223067 |
T |
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| Q |
450 |
ggcc |
453 |
Q |
| |
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|||| |
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| T |
23223066 |
ggcc |
23223063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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