View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0209_low_3 (Length: 472)

Name: NF0209_low_3
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0209_low_3
NF0209_low_3
[»] scaffold0536 (3 HSPs)
scaffold0536 (207-430)||(6497-6720)
scaffold0536 (242-424)||(10514-10696)
scaffold0536 (101-160)||(6391-6450)
[»] chr4 (9 HSPs)
chr4 (207-430)||(48912331-48912554)
chr4 (207-424)||(48958120-48958337)
chr4 (207-425)||(48965304-48965519)
chr4 (207-424)||(48961267-48961486)
chr4 (319-430)||(48974088-48974199)
chr4 (101-160)||(48912225-48912284)
chr4 (348-391)||(48951252-48951295)
chr4 (101-160)||(48958384-48958443)
chr4 (123-157)||(48974349-48974383)
[»] chr6 (3 HSPs)
chr6 (241-424)||(12590192-12590375)
chr6 (246-412)||(12483492-12483658)
chr6 (102-160)||(12483345-12483403)
[»] chr2 (4 HSPs)
chr2 (207-427)||(13448336-13448553)
chr2 (207-409)||(13440191-13440390)
chr2 (207-409)||(13454825-13455024)
chr2 (105-160)||(13448600-13448655)
[»] chr8 (1 HSPs)
chr8 (207-424)||(12641467-12641684)
[»] chr7 (2 HSPs)
chr7 (207-412)||(3417516-3417718)
chr7 (123-159)||(3417432-3417468)
[»] chr5 (2 HSPs)
chr5 (249-386)||(12540699-12540836)
chr5 (211-296)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 207 - 430
Target Start/End: Original strand, 6497 - 6720
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc 6596  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6597 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta 6696  T
Q  407 caatgaaaagttgataacacaggt 430  Q
    ||||||||||||||||||||||||    
T  6697 caatgaaaagttgataacacaggt 6720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 242 - 424
Target Start/End: Original strand, 10514 - 10696
Alignment:
Q  242 aaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattcc 341  Q
    ||||||||||||||||||||||| ||||||||| || || ||||||||| | |||||||  | |||||||||||||||||| ||||||||||||||||||    
T  10514 aaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattcc 10613  T
Q  342 actgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataac 424  Q
    || || ||||| ||||||||||||||||| ||||||||||||||  |||| |||||||||||||||||||| |||||||||||    
T  10614 accgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaagttgataac 10696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 6391 - 6450
Alignment:
Q  101 actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6391 actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 6450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 207 - 430
Target Start/End: Original strand, 48912331 - 48912554
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||| ||||||||| ||| |    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg 48912430  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||| |||||    
T  48912431 tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagtttta 48912530  T
Q  407 caatgaaaagttgataacacaggt 430  Q
    |||||| |||||||||||||||||    
T  48912531 caatgagaagttgataacacaggt 48912554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 48958337 - 48958120
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| |||||||||  || |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    ||||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattcta 48958138  T
Q  407 caatgaaaagttgataac 424  Q
    |||||| |||||||||||    
T  48958137 caatgagaagttgataac 48958120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 207 - 425
Target Start/End: Complemental strand, 48965519 - 48965304
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    ||||| ||||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||| || ||| ||||| ||||||||   ||||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctg 48965423  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    ||||||| |||||||| |||||||| ||||| ||||| || ||||||||| |||| |||||||||||||| || |||||    || ||||||||||| ||    
T  48965422 tgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattcta 48965323  T
Q  407 caatgaaaagttgataaca 425  Q
    ||| |||||  ||||||||    
T  48965322 caacgaaaaactgataaca 48965304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 207 - 424
Target Start/End: Complemental strand, 48961486 - 48961267
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||| || ||||| ||||||||||| || | |||||||||||||||||| |||| ||| ||||| ||||||||||||||  || |||||| ||| |    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg 48961387  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaa--ttccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattt 404  Q
    |||||| ||||||||||||||| ||||||||   |||||  ||||||||| |||||||||| | || ||||| || ||||| || || |||||||||||     
T  48961386 tgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaattc 48961287  T
Q  405 tacaatgaaaagttgataac 424  Q
    ||||| || |||||||||||    
T  48961286 tacaacgagaagttgataac 48961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 430
Target Start/End: Complemental strand, 48974199 - 48974088
Alignment:
Q  319 tgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagtt 418  Q
    |||| ||||| |||||||| ||||| || || || ||||||||||||||||| |||||||||||||| ||||| |  |||||||| ||||| || |||||    
T  48974199 tgacacattgcgggtggaactccaccgtggaagccgttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagtt 48974100  T
Q  419 gataacacaggt 430  Q
    |||||| |||||    
T  48974099 gataactcaggt 48974088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 48912225 - 48912284
Alignment:
Q  101 actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 160  Q
    |||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||    
T  48912225 actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 48912284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 391
Target Start/End: Complemental strand, 48951295 - 48951252
Alignment:
Q  348 gaggctgttagtgcaggggttccgatgatcacgtggccggtgca 391  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  48951295 gaggctattagtgtaggggttccgatgatcacgtggccggtgca 48951252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 48958443 - 48958384
Alignment:
Q  101 actttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 160  Q
    |||||| |||||||| ||||||||||||||||| |||||| ||||  |||||||||||||    
T  48958443 actttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcc 48958384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 48974383 - 48974349
Alignment:
Q  123 atagaagcatcgggtcacaaattcatatgggttgt 157  Q
    |||||||||||||||||| ||||||||||||||||    
T  48974383 atagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 424
Target Start/End: Original strand, 12590192 - 12590375
Alignment:
Q  241 gaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattc 340  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| || ||||| ||||||||||| |||||||| ||||||||    
T  12590192 gaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattc 12590291  T
Q  341 cactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatgaaaagttgataac 424  Q
    |   || ||||| |||||||| ||  ||||||||||||| |||||  || | || ||||| ||||||||||| |||||||||||    
T  12590292 cgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttacaatgagaagttgataac 12590375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 412
Target Start/End: Original strand, 12483492 - 12483658
Alignment:
Q  246 aagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactg 345  Q
    |||| |||||| || || ||||| ||||| ||||| ||  ||||||||||||||   || |||||||| |||||||| || ||||| ||||||||   ||    
T  12483492 aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg 12483591  T
Q  346 ttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaattttacaatga 412  Q
    | || || |||||||||||| |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  12483592 tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatga 12483658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 12483345 - 12483403
Alignment:
Q  102 ctttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 160  Q
    |||||||| ||| |||| || ||||||||||||||| | ||||||||||||||||||||    
T  12483345 ctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcc 12483403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 207 - 427
Target Start/End: Complemental strand, 13448553 - 13448336
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    ||||| || |||||||| |||||||||||||||||   ||||||||||||||| |||||||||||||| ||||| |||| ||| |||||||||   || |    
T  13448553 tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcag 13448457  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    |||| |  |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||    
T  13448456 tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta 13448357  T
Q  407 caatgaaaagttgataacaca 427  Q
    |||||| ||  ||||||||||    
T  13448356 caatgagaaactgataacaca 13448336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 409
Target Start/End: Complemental strand, 13440390 - 13440191
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    ||||||||||||||||||||||||||||| ||  |   || || ||||||||| |||| ||||||||| |||||||||| ||| |||||||||   || |    
T  13440390 tggttgccaaagggattcgaagagagaaacattag---gaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcgg 13440294  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    |||| |  |||||||||||||| ||| |||| || | ||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||    
T  13440293 tggggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattcta 13440194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 409
Target Start/End: Complemental strand, 13455024 - 13454825
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||| |||||||| ||||||| ||| ||||   |||| ||||||||||| |||||||||||||| |||||||||| ||| ||||| |||   || |    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcg---agaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcag 13454928  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    |||| |  |||||||||||||| ||| |||| || |  || |||||||||||    || ||||| ||||| |||||||| || || ||||| ||||| ||    
T  13454927 tggggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattcta 13454828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 13448655 - 13448600
Alignment:
Q  105 tacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 160  Q
    |||||||| ||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13448655 tacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 13448600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 207 - 424
Target Start/End: Original strand, 12641467 - 12641684
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||| || |||||||||||||||||| | | ||| ||||| ||||| || |||||||  ||||| |||||||| |||||||| ||||||   ||||    
T  12641467 tggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctg 12641566  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    ||||||| || ||||||||||| |||| ||| |||   || |||||||||||||||||| |||| |||||||||||||| ||||| |||||||| || ||    
T  12641567 tgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttcta 12641666  T
Q  407 caatgaaaagttgataac 424  Q
     ||||| ||| |||||||    
T  12641667 taatgagaagctgataac 12641684  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 412
Target Start/End: Original strand, 3417516 - 3417718
Alignment:
Q  207 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctg 306  Q
    |||||||| |||||||| || |||||||| || |||||||||   ||||||||  ||||||||||||| ||||| |||  ||| |||||||||   || |    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcgg 3417612  T
Q  307 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcacggagaacaatttta 406  Q
    | || |  |||||||| ||||||||| |||| ||   ||||||||||||| ||||||| ||||| ||||| ||||||||||  || ||||| ||||| |     
T  3417613 tagggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgtt 3417712  T
Q  407 caatga 412  Q
    ||||||    
T  3417713 caatga 3417718  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 3417432 - 3417468
Alignment:
Q  123 atagaagcatcgggtcacaaattcatatgggttgttc 159  Q
    ||||||||||||||||||  |||||||||||||||||    
T  3417432 atagaagcatcgggtcacccattcatatgggttgttc 3417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 12540836 - 12540699
Alignment:
Q  249 aagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctgtgggtgcgtttatgacgcattgtgggtggaattccactgttg 348  Q
    ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||   || ||||| |  |||||||| ||||||||| | || || | ||| |    
T  12540836 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtag 12540737  T
Q  349 aggctgttagtgcaggggttccgatgatcacgtggccg 386  Q
    |||||||| |||| || ||||| ||||| |||||||||    
T  12540736 aggctgttggtgcgggagttccaatgataacgtggccg 12540699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 28385520 - 28385438
Alignment:
Q  211 tgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagc 296  Q
    ||||||||||||| || |||||||| || |||||||||   ||||| || || ||||||||||| ||||||||| |||| ||||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagc 28385438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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