View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0209_low_4 (Length: 393)

Name: NF0209_low_4
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0209_low_4
NF0209_low_4
[»] chr1 (2 HSPs)
chr1 (30-386)||(51119368-51119739)
chr1 (185-275)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (66-335)||(1663250-1663529)
chr3 (209-287)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (66-291)||(28964694-28964917)
chr4 (76-276)||(7043244-7043448)
chr4 (185-290)||(11494107-11494213)
chr4 (185-290)||(9881272-9881378)
chr4 (208-290)||(32347602-32347683)
chr4 (208-276)||(26905394-26905461)
chr4 (184-271)||(25170244-25170330)
chr4 (208-274)||(24520783-24520848)
[»] chr2 (4 HSPs)
chr2 (202-336)||(12635115-12635250)
chr2 (74-136)||(12644630-12644692)
chr2 (185-276)||(40498002-40498092)
chr2 (204-293)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (185-276)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (185-301)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (278-336)||(40905516-40905574)
chr5 (185-224)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (208-337)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (185-276)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 30 - 386
Target Start/End: Complemental strand, 51119739 - 51119368
Alignment:
Q  30 tctatgtttcagaattatattcttttctctctgttagatcaaa-----------atgcgcaacataagtgcttttcataataagctgtttcaagcaagat 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||           |||||||||||||||| |||||||||||||||||||||||||||||    
T  51119739 tctatgtttcacaattatattcttttctctctgttagatcaaactatgatcaaaatgcgcaacataagtgtttttcataataagctgtttcaagcaagat 51119640  T
Q  119 gagaaaataacaaacaaacttgtaaaactgagagaatagagaatggagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119639 gagaaaataacaaacaaacttgtaaaactgagagaatagagaatgaagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaa 51119540  T
Q  219 gccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac----taacacgttttgtaacaaaattctaactaatttgttacatggg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||    
T  51119539 gccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaactaacacgttttgtaacaaaattctaactaacttgttacatggg 51119440  T
Q  315 agttatggattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatctca 386  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119439 agttatgaattaaatcttaacactctcttcaacaacacttcttcatgtctttctgttttgtttttcatctca 51119368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 25590744 - 25590835
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaac 275  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| |||||  |||||||| |||||| || || |||||| ||||||||||    
T  25590744 aatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaactaac 25590835  T

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Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 66 - 335
Target Start/End: Complemental strand, 1663529 - 1663250
Alignment:
Q  66 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 165  Q
    |||||| ||| | ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||    
T  1663529 gatcaatatgtgtaacataagtgcttttcagaataagctggtttaagcaagatgagaaaataacaaacaaacttgtaagactgacagagaagagaatgga 1663430  T
Q  166 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 263  Q
    |||  ||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  1663429 gagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatc 1663330  T
Q  264 taac--------taactaacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaac 335  Q
    ||||        ||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1663329 taactaacaaactaactaagaagttttgtaacaaaattctaactaacttgctacatggcagttatggattaaatcttaac 1663250  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 51810630 - 51810551
Alignment:
Q  209 acattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaac 287  Q
    |||||||||||||||| |||| |||||  ||||| || ||||||||||||||||||| ||| | ||||  ||||||||||    
T  51810630 acattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaac 51810551  T

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Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 291
Target Start/End: Original strand, 28964694 - 28964917
Alignment:
Q  66 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 165  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||| ||||||||    ||||||||||||||||  ||||||||||    
T  28964694 gatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatgagaaattaacaaac----ttgtaaaactgagagagaagagaatgga 28964789  T
Q  166 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 263  Q
    |||  ||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  28964790 gagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatc 28964889  T
Q  264 taactaactaacacgttttgtaacaaaa 291  Q
    |||||||| ||||  |||||||| ||||    
T  28964890 taactaacaaacaaattttgtaagaaaa 28964917  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 76 - 276
Target Start/End: Original strand, 7043244 - 7043448
Alignment:
Q  76 cgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgaga--gaatagagaatggagag--ttt 171  Q
    |||| ||||||||||||||  |||||| ||||| ||||||||||| | |||||||||||||  |||  || | |||  ||  |||||||||||||  |||    
T  7043244 cgcagcataagtgcttttctcaataagttgttttaagcaagatga-agaataacaaacaaaactgttgaagttagaaagagaagagaatggagagagttt 7043342  T
Q  172 acttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatata--acacttacttgtagcacaagctatctaacta 269  Q
     ||||||||  | ||||||||||||   | ||||||||||||||| ||||||||||| | | |||||  |||||| ||||||||||||||||||||||||    
T  7043343 gcttgtaata-tgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgcttgtagcacaagctatctaacta 7043441  T
Q  270 actaaca 276  Q
    |||||||    
T  7043442 actaaca 7043448  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 11494213 - 11494107
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagcct-tttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 283  Q
    |||||||||||||| | ||||||||||||||||||||| | |||| |||||  ||| |||| |||||||||||| |||||| || |||||||  ||||||    
T  11494213 aatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttg 11494114  T
Q  284 taacaaa 290  Q
    |||||||    
T  11494113 taacaaa 11494107  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 9881378 - 9881272
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagcc-ttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 283  Q
    |||||||||||| | | |||||||||||||||||||| || |||| |||||  |||||||| ||||||| |||||||| ||   ||||||||  ||||||    
T  9881378 aatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaactagttttg 9881279  T
Q  284 taacaaa 290  Q
    |||||||    
T  9881278 taacaaa 9881272  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 32347602 - 32347683
Alignment:
Q  208 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaa 290  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaa 32347683  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 26905461 - 26905394
Alignment:
Q  208 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 276  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||| ||| |||||||||||||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaaca 26905394  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 25170330 - 25170244
Alignment:
Q  184 taatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac 271  Q
    |||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||| |||||||||||||    
T  25170330 taatctcattaagacttgaagtttcacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaatctatctaactaac 25170244  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 24520783 - 24520848
Alignment:
Q  208 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaa 274  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| ||||||| |||||||||||||    
T  24520783 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctgtctaactaactaa 24520848  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 12635250 - 12635115
Alignment:
Q  202 aatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgt-aacaaaattctaacta 300  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||||| |    
T  12635250 aatgtacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaacca 12635151  T
Q  301 atttgttacatgggagttatggattaaatcttaaca 336  Q
    | ||| ||  ||| ||||||| ||||| ||||||||    
T  12635150 acttgctatgtggcagttatgtattaactcttaaca 12635115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 12644692 - 12644630
Alignment:
Q  74 tgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaa 136  Q
    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||  |||||||    
T  12644692 tgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatgagaaaatagaaaacaaa 12644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 276
Target Start/End: Complemental strand, 40498092 - 40498002
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 276  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||| | ||| ||||| |  |||| |||||| ||||||| ||||||||    
T  40498092 aatctcattaagaattaaagttgcacaatacaaagccttttatatgcaca-atagcacttgccggtagaacaagcaatctaacaaactaaca 40498002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 6962206 - 6962116
Alignment:
Q  204 tgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaatt 293  Q
    ||||||||||||||||||||| |||| |||||  |||||||| ||||||| ||||| |  ||  |||||||||  ||||||||||||||||    
T  6962206 tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatt 6962116  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 29010837 - 29010928
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 276  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||    
T  29010837 aatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaaca 29010928  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 26794267 - 26794384
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 283  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||||    
T  26794267 aatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttg 26794366  T
Q  284 taacaaaattctaactaa 301  Q
    |||||||||  |||||||    
T  26794367 taacaaaatcttaactaa 26794384  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 40905574 - 40905516
Alignment:
Q  278 gttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaaca 336  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  40905574 gttttgtaacaaaattctaactaacttgctacatggcagttatagattaaatcttaaca 40905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 14234195 - 14234156
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttt 224  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  14234195 aatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 337
Target Start/End: Complemental strand, 8265942 - 8265811
Alignment:
Q  208 cacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaattctaactaatttg- 305  Q
    ||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||| |||||||||   |||||| |||     
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgc 8265843  T
Q  306 ttacatgggagttatggattaaatcttaacac 337  Q
    |||  ||| ||||||| ||||| |||||||||    
T  8265842 ttaggtggcagttatgaattaattcttaacac 8265811  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 59489 - 59579
Alignment:
Q  185 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 276  Q
    ||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||  ||||| ||||||| ||||||||| |||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaaca 59579  T

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