View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0209_low_5 (Length: 313)
Name: NF0209_low_5
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0209_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 300
Target Start/End: Original strand, 42609762 - 42610032
Alignment:
| Q |
30 |
attgcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagct |
129 |
Q |
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| T |
42609762 |
attgcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagct |
42609861 |
T |
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| Q |
130 |
cagtgaattgagcaaacataagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42609862 |
cagtgaattgagcaaacataagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatg |
42609961 |
T |
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| Q |
230 |
aagtgccttatcccttgaaacatcaataagtggattgtcattcacggaatttatctccctctcaatcatct |
300 |
Q |
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| T |
42609962 |
aagtgccttatcccttgaaacatcaataagtggattgtcattcacggaatttatctccctctcaatcatct |
42610032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 28184394 - 28184599
Alignment:
| Q |
48 |
ttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcagtgaattgagcaaaca |
147 |
Q |
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| T |
28184394 |
ttgaaaccataatccaaacttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaaca |
28184493 |
T |
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| Q |
148 |
taagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatgaagtgccttatcccttga |
247 |
Q |
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| T |
28184494 |
tgagtttaccgatcgaagcaagagctaaacgagtgttgtccattgaaactccgataggtgttccttgaaagttaccaccatgtatggccttgttccttga |
28184593 |
T |
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| Q |
248 |
aacatc |
253 |
Q |
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|||||| |
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| T |
28184594 |
aacatc |
28184599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 40945040 - 40944844
Alignment:
| Q |
33 |
gcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcag |
132 |
Q |
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|||| ||| ||||| ||||| || ||||||||||| ||||| | || |||| ||| ||||||||||||| ||||| || | ||||| |||||||||| |
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| T |
40945040 |
gcaatttcagctcccttgaaaccataatccaaactaggatttctactcgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcag |
40944941 |
T |
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| Q |
133 |
tgaattgagcaaacataagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatg |
229 |
Q |
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||||||||||||||||||||| ||||| | || | || ||||| || |||||||| ||||| ||||| || || ||||| || ||||| ||||| |
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| T |
40944940 |
agaattgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatggatactccaataggcgttccttgaaagtttccaccatg |
40944844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 40959005 - 40958809
Alignment:
| Q |
33 |
gcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcag |
132 |
Q |
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|||| ||| ||||| ||||| || ||||||||||| ||||| | || |||| ||| ||||||||||||| ||||| || | ||||| |||||||||| |
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| T |
40959005 |
gcaatttcagctcccttgaaaccataatccaaactaggatttctacttgcagaaagatttgaaggcaatccattgttgtaaaaatcattgacaagctcag |
40958906 |
T |
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| Q |
133 |
tgaattgagcaaacataagtttaccaatggcagcaatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatttcctccatg |
229 |
Q |
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||||||||||||||||||||| ||||| | || | || ||||| || |||||||| ||||| ||||| || || ||||| || ||||| ||||| |
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| T |
40958905 |
agaattgagcaaacataagtttgccaattgatgcgagagccaaacgtgtattatccatggatactccaataggcgttccttgaaattttccaccatg |
40958809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 43216637 - 43216524
Alignment:
| Q |
183 |
ttatccatcgatacaccaatcggtgtaccttggaaatttcctccatgaagtgccttatcccttgaaacatcaataagtggattgtcattcacggaattta |
282 |
Q |
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|||||||| || || ||||| || || ||||||||||| || |||| || ||||||||| ||| |||||||| || |||||||| ||||| ||||||| |
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| T |
43216637 |
ttatccattgaaactccaattggggtgccttggaaattaccaccatttagagccttatccgttgccacatcaatcagaggattgtcgttcactgaattta |
43216538 |
T |
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| Q |
283 |
tctccctctcaatc |
296 |
Q |
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||||||| |||||| |
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| T |
43216537 |
tctccctttcaatc |
43216524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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