View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0209_low_8 (Length: 268)
Name: NF0209_low_8
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0209_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 41861006 - 41861244
Alignment:
| Q |
29 |
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacataaacactcttttgattaggtatagctttgaatgaaatttgtttc |
128 |
Q |
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| T |
41861006 |
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacatacacactcttttgattaggtatagctttgaatgaaaattgtttc |
41861105 |
T |
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| Q |
129 |
tttaaattgccaataatattgcatttcgatgaacctcaattcaattatttttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt |
228 |
Q |
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| T |
41861106 |
tttaaattgccaatgatcttgcatttcgatgagcctcaattcaattattgttgaacttgattcaaaatagtctgatgcaatattatgagtac--atatgt |
41861203 |
T |
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| Q |
229 |
tcactagttta-gatcactattactattattataataaatt |
268 |
Q |
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| T |
41861204 |
tcactagtttaggattactattactattattataataaatt |
41861244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 20454103 - 20454343
Alignment:
| Q |
29 |
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacataaacactcttttgattaggtatagctttgaatgaaatttgtttc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |
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| T |
20454103 |
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacatacacactcttttgattaggtatagctttgaatgaaaattgttcc |
20454202 |
T |
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| Q |
129 |
tttaaattgccaataatattgcatttcgatgaacctcaattcaattatttttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt |
228 |
Q |
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|||| |||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20454203 |
tttacattgccaataatcttgcattttgatgagcctcaattcaattagtgttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt |
20454302 |
T |
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| Q |
229 |
tcactagttta-gatcactattactattattataataaatt |
268 |
Q |
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| T |
20454303 |
tcactagtttaggattactattactattattataataaatt |
20454343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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