View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0209_low_8 (Length: 268)
Name: NF0209_low_8
Description: NF0209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0209_low_8
[» ] chr5 (1 HSPs)
[» ] chr1 (1 HSPs)
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 41861006 - 41861244
Alignment:
Q
29
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacataaacactcttttgattaggtatagctttgaatgaaatttgtttc
128
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
T
41861006
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacatacacactcttttgattaggtatagctttgaatgaaaattgtttc
41861105
T
Q
129
tttaaattgccaataatattgcatttcgatgaacctcaattcaattatttttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt
228
Q
|||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
T
41861106
tttaaattgccaatgatcttgcatttcgatgagcctcaattcaattattgttgaacttgattcaaaatagtctgatgcaatattatgagtac--atatgt
41861203
T
Q
229
tcactagttta-gatcactattactattattataataaatt
268
Q
||||||||||| ||| |||||||||||||||||||||||||
T
41861204
tcactagtttaggattactattactattattataataaatt
41861244
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 20454103 - 20454343
Alignment:
Q
29
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacataaacactcttttgattaggtatagctttgaatgaaatttgtttc
128
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
T
20454103
actacttaagaagctaatgatccaaaacgagatgccatccaaaaggtttggaacatacacactcttttgattaggtatagctttgaatgaaaattgttcc
20454202
T
Q
129
tttaaattgccaataatattgcatttcgatgaacctcaattcaattatttttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt
228
Q
|||| |||||||||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
T
20454203
tttacattgccaataatcttgcattttgatgagcctcaattcaattagtgttgaacttgattcaaaatagtctgatgcaatattatgagtacatatatgt
20454302
T
Q
229
tcactagttta-gatcactattactattattataataaatt
268
Q
||||||||||| ||| |||||||||||||||||||||||||
T
20454303
tcactagtttaggattactattactattattataataaatt
20454343
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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