View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0212_high_1 (Length: 309)
Name: NF0212_high_1
Description: NF0212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0212_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 43288825 - 43289094
Alignment:
| Q |
29 |
aaagagaattgttgaaggacggtacgtttgattccctaatgacaccgctgtctcttgtccaattcatatggcatcttccaagccatctcaactaccaaag |
128 |
Q |
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| T |
43288825 |
aaagagaattgttgaaggacggtacgtttgattccctaatgacaccgctgtctcttgtccaattcatatggcatcttccaagccatctcaactaccaaag |
43288924 |
T |
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| Q |
129 |
gagtaaaaacctctttaataaacatttttcatttcaaaaagcattctaattccaatacatataataataatgaaaagatctatgtgttttcctcactcaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288925 |
gagtaaaaacctctttaataaacatttttcatttcaaaaagcattctaattccaatacatataataataatgaaaagatctatgtgttttcctcactcaa |
43289024 |
T |
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| Q |
229 |
gacactgattgtaataaagaatataaagatgcccttctttcttaatctctccgtcttattgcaaagtata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43289025 |
gacactgattgtaataaagaatataaagatgcccttctttcttaatctctccgtcttattgcaaagtata |
43289094 |
T |
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