View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0212_low_3 (Length: 281)

Name: NF0212_low_3
Description: NF0212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0212_low_3
NF0212_low_3
[»] chr3 (5 HSPs)
chr3 (42-247)||(11651873-11652078)
chr3 (146-247)||(48648903-48649004)
chr3 (146-247)||(51826756-51826857)
chr3 (91-130)||(48648835-48648874)
chr3 (49-77)||(51826988-51827016)
[»] chr7 (3 HSPs)
chr7 (42-247)||(31954497-31954702)
chr7 (146-244)||(31953563-31953661)
chr7 (91-130)||(31953690-31953729)
[»] chr5 (5 HSPs)
chr5 (42-247)||(41045956-41046161)
chr5 (42-190)||(31082169-31082317)
chr5 (42-136)||(22799148-22799242)
chr5 (42-136)||(19366001-19366095)
chr5 (151-234)||(16154735-16154818)
[»] chr4 (4 HSPs)
chr4 (42-247)||(5590305-5590513)
chr4 (42-247)||(48127857-48128065)
chr4 (146-247)||(24158550-24158651)
chr4 (91-130)||(24158482-24158521)
[»] chr1 (2 HSPs)
chr1 (42-136)||(50271194-50271288)
chr1 (146-247)||(50271066-50271167)
[»] chr2 (2 HSPs)
chr2 (146-247)||(23501792-23501893)
chr2 (51-130)||(23501917-23501996)
[»] chr6 (3 HSPs)
chr6 (146-247)||(33436004-33436105)
chr6 (91-130)||(33435936-33435975)
chr6 (49-77)||(33435845-33435873)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 11651873 - 11652078
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||         
T  11651873 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 11651972  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 241  Q
        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  11651973 ttttacataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttcttcccattg 11652072  T
Q  242 tttctt 247  Q
    ||||||    
T  11652073 tttctt 11652078  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 48648903 - 48649004
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| |||||||    
T  48648903 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 48649002  T
Q  246 tt 247  Q
    ||    
T  48649003 tt 48649004  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 51826857 - 51826756
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||| || |||||||    
T  51826857 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagcctcatttctctatccattgtttc 51826758  T
Q  246 tt 247  Q
    ||    
T  51826757 tt 51826756  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 48648835 - 48648874
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  48648835 atgaatggaagtgatgttctacttgttcaacaagttcaat 48648874  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 51827016 - 51826988
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  51827016 tattgaggacatggaattcataacaacaa 51826988  T

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Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 31954702 - 31954497
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||         
T  31954702 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttat 31954603  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 241  Q
        |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||    
T  31954602 ttttacataatattgcttgttaatttaatcttgattaatattttgaattcaaaatgatcgaggctgctgtatcgtgcaagccccatttttctacccattg 31954503  T
Q  242 tttctt 247  Q
    ||||||    
T  31954502 tttctt 31954497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 31953661 - 31953563
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgttt 244  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||||||    
T  31953661 acataataatgcttgttaatttaatcttcattaatattttgaattcaaaatgattgaggctgctgtgtcgtgcaagcctcatttctctacccattgttt 31953563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 31953729 - 31953690
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  31953729 atgaatggaagtcttgttctacttgttcaacaagttcaat 31953690  T

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Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 41045956 - 41046161
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||         
T  41045956 tcaaccgtattgagtacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaataagttcaatgcataatttat 41046055  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttg 241  Q
        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||     
T  41046056 ttttacataataattcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctacccatta 41046155  T
Q  242 tttctt 247  Q
    ||||||    
T  41046156 tttctt 41046161  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 31082317 - 31082169
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||         
T  31082317 tcaaccgtattgaggacatggaattcataacaacaatgtattgccactaatgaattgaagtgctgttctacttgttcaacaagttcaatgcataatttta 31082218  T
Q  142 nnngacataataatgcttgttaatttaattttgattaatattttgaatt 190  Q
        ||||||||||||||||||||||||| |||||||||||||||||||    
T  31082217 ttttacataataatgcttgttaatttaatcttgattaatattttgaatt 31082169  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 22799242 - 22799148
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22799242 tcaaccgtattgaggacatgaaattcataacaacaatgtattgccaccgatgaattgaagtgctgttctacttgttcaacaagttcaatgcataa 22799148  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 19366095 - 19366001
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||    
T  19366095 tcaaccgtattgaggacatggaattcataacaacgctgtattgccaccgatgatatgaagtgttgttctacttcttcaacaagttcaatgcataa 19366001  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 16154735 - 16154818
Alignment:
Q  151 ataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttcta 234  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||    
T  16154735 ataatgcttgttaattaaatcttgattaatattttgaattcaaaatgatcgaggcggctgtatcgtgcaagcctcatttctcta 16154818  T

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Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 42 - 247
Target Start/End: Complemental strand, 5590513 - 5590305
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  5590513 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 5590414  T
Q  142 nnng---acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 238  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  5590413 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 5590314  T
Q  239 ttgtttctt 247  Q
    |||||||||    
T  5590313 ttgtttctt 5590305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 48127857 - 48128065
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataannnnn 141  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  48127857 tcaaccgtattgaggacatgtaattcataacaacaatgtatttccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataattttt 48127956  T
Q  142 nnng---acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccct 238  Q
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  48127957 tttttttacataataatgcttgttaattaaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagccccatttttctaccca 48128056  T
Q  239 ttgtttctt 247  Q
    |||||||||    
T  48128057 ttgtttctt 48128065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 24158550 - 24158651
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||| |||||||    
T  24158550 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaagcctcatttctccacccattgtttc 24158649  T
Q  246 tt 247  Q
    ||    
T  24158650 tt 24158651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 24158482 - 24158521
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  24158482 atgaatggaagtgatgttctacttgttcaacaagttcaat 24158521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 50271288 - 50271194
Alignment:
Q  42 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50271288 tcaaccgtattgaggacatggaattcataacaacaatgtattgccaccgatgaattgaagtgttgttctacttgttcaacaagttcaatgcataa 50271194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 50271167 - 50271066
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  50271167 acataataatgcttgttaatttaatcttgattaatattttgaattcaaaatgattgaggttgctgtatcgtgcaagccccatttttctacccattgtttc 50271068  T
Q  246 tt 247  Q
    ||    
T  50271067 tt 50271066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 23501893 - 23501792
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| ||||||| |||||||    
T  23501893 acataataatgcttgttaatttaatcttgattaatattttgaattaaaaatgattgaggctagtgtatcgtgcaaacctcatttctctacccattgtttc 23501794  T
Q  246 tt 247  Q
    ||    
T  23501793 tt 23501792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23501996 - 23501917
Alignment:
Q  51 ttgaggacatggaattcataacaacaatgtattgccaccaatgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||||||| ||||| ||||||||||| |||| ||||  |||||||| ||||||||| ||||||||| |||||||||||    
T  23501996 ttgaggacatagaattgataacaacaatatattaccactgatgaattgtagtgttgttatacttgttcgacaagttcaat 23501917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 33436004 - 33436105
Alignment:
Q  146 acataataatgcttgttaatttaattttgattaatattttgaattcaaaatgattgaggctgctgtatcgtgcaaaccccatttttctaccctttgtttc 245  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||    ||||| ||||||| |||||||    
T  33436004 acataataatgcttgttaatttaatcttgattaatattttgaattcaaactgactgaggttgctgtatcgtgcaagtgtcatttctctacccgttgtttc 33436103  T
Q  246 tt 247  Q
    ||    
T  33436104 tt 33436105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 33435936 - 33435975
Alignment:
Q  91 atgaattgaagtgttgttctacttgttcaacaagttcaat 130  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  33435936 atgaatggaagtgttgttctacttgttcaacaagttcaat 33435975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 33435845 - 33435873
Alignment:
Q  49 tattgaggacatggaattcataacaacaa 77  Q
    |||||||||||||||||||||||||||||    
T  33435845 tattgaggacatggaattcataacaacaa 33435873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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