View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_103 (Length: 286)
Name: NF0214_high_103
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 34704790 - 34704640
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcatc |
156 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
34704790 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
34704691 |
T |
|
| Q |
157 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34704690 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
34704640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 28548411 - 28548561
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcatc |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
28548411 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
28548510 |
T |
|
| Q |
157 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548511 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
28548561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 41867999 - 41867849
Alignment:
| Q |
57 |
ttcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcatc |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
41867999 |
ttcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcacc |
41867900 |
T |
|
| Q |
157 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41867899 |
gctttgacaggctttgtggcagattcctcaccatccagctcatataccgtc |
41867849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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