View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_high_105 (Length: 279)
Name: NF0214_high_105
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_105 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44730301 - 44730072
Alignment:
| Q |
1 |
cataacaatatcctcttatgggaaaccatatctcatttcatgccacaaccaaaatcatttactatgatggttcagttcaagaatttgatcaaccaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730301 |
cataacaatatcctcttatgggaaaccatatctcatttcatgccacaaccaaaatcatttactatgatggttcagttcaagaatttgatcaaccaataac |
44730202 |
T |
|
| Q |
101 |
agtagcagagcttatgttagatcacccaaaacatgttgttgttgagtttcattcagcaatgaaccagaaaaaaccaacacctttaccagctgacaagaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730201 |
agtagcagagcttatgttagatcacccaaaacatgttgttgttgagtttcattcagcaatgaaccagaaaaaaccaacacctttaccagctgacaagaac |
44730102 |
T |
|
| Q |
201 |
ctagaaatgaacaaaaaatatgtcatggtt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44730101 |
ctagaaatgaacaaaaaatatgtcatggtt |
44730072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 214
Target Start/End: Original strand, 39083839 - 39083987
Alignment:
| Q |
66 |
gatggttcagttcaagaatttgatcaaccaataacagtagcagagcttatgttagatcacccaaaacatgttgttgttgagtttcattcagcaatgaacc |
165 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||| |||||| | ||| | ||||| ||| || | || || ||||||||||||||||| |||||| |
|
|
| T |
39083839 |
gatggttcagttcatgaatttgatgaagcaataacagtggcagagttaatgatggatcatccacaaaaagtagtagttgagtttcattcagctgtgaacc |
39083938 |
T |
|
| Q |
166 |
agaaaaaaccaacacctttaccagctgacaagaacctagaaatgaacaa |
214 |
Q |
| |
|
| |||| ||||||||| ||||| ||||||||||| ||||| |||||||| |
|
|
| T |
39083939 |
aaaaaagaccaacaccattacctgctgacaagaagctagatatgaacaa |
39083987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1271 times since January 2019
Visitors: 2391