View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_11 (Length: 528)
Name: NF0214_high_11
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 30 - 515
Target Start/End: Complemental strand, 28864999 - 28864514
Alignment:
| Q |
30 |
tagactagatatggtattgatgaaggaatgatatgtactggtgttatgcagaagtgtgatgatgccaaccaacaagaaattacgttaatacattctttgt |
129 |
Q |
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| T |
28864999 |
tagacaagatatggtattgatgaaggaatgatatgtactggtgttatgcagaagtgtgatgattccaaccatcaagaaattacgttaatacattctttgt |
28864900 |
T |
|
| Q |
130 |
ctaatgccttaatgatcttaattctaacaataacaaaggctcttttagccaactgtatatatcatctattaagaaattcatgcaattcccaggaaacttt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864899 |
ctaatgccttaatgatcttaattctaacaataacaaaggctcttttagctaactgtatatatcatctattaagaaattcatgcaattcccaggaaacttt |
28864800 |
T |
|
| Q |
230 |
ggcacaaagcaacaagcaattattagggtaatgcatctcacaaagagagaacatagtcaacatactctaaaaagttgaactaattaagtcttgtagataa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864799 |
ggcacaaagcaacaagcaattattagggtaatgcatctcacaaagagagaacatagtcaacatactctaaaaagttgaactaattaagtcttgtagataa |
28864700 |
T |
|
| Q |
330 |
ttctttgcagtgtttcatttacagtgtttcatcttgaactttttccattgcatttacctcatcaccatgggcatgattttgatcttctgtgttgaggact |
429 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864699 |
ttctttgcagtgtttcatttacagtgtttcaccttgcactttttccattgcatttacctcatcaccatgggcatgattttgatcttctgtgttgaggact |
28864600 |
T |
|
| Q |
430 |
taggagtttatcttcctcgaaggccaccatacgcaaatgtaatggatcctccatcatcagcttagcaactaagtaaccagcaacag |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28864599 |
taggagtttatcttcctcgaaggccaccatacgcaaatgtaatggatcctccatcatcagcttagcaactaagtaaccagcaacag |
28864514 |
T |
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