View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_high_113 (Length: 269)
Name: NF0214_high_113
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_high_113
[» ] scaffold0617 (2 HSPs)
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 654466 - 654692
Alignment:
Q
30
catctctcgtagtttgataaattgttcattcttcaatggcattgtcataatatcagcaatttgattctgggtattacggtacttcaatttcacagttcct
129
Q
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
T
654466
catctctcgtagtttgataaattgttccttcttcaatggttttgtcataatatcagcaatttgattctgggtattacagtacttcaatttcacagttcct
654565
T
Q
130
tcattcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacagaatgctttgacaattgtattgttgaactgttat
229
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
654566
tcattcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacgaaatgctttgacaattgtattgttgaactgttat
654665
T
Q
230
cacagtacattatgctgccttcatctc
256
Q
|||||||||||||||||||||| ||||
T
654666
cacagtacattatgctgccttcttctc
654692
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 14247786 - 14247723
Alignment:
Q
133
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag
196
Q
||||||||||| || | ||| ||||| ||||||||||| ||||||||||| ||||| |||||||
T
14247786
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag
14247723
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0617 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 196 - 259
Alignment:
Q
133
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag
196
Q
||||||||||| || | ||| ||||| ||||||||||| ||||||||||| ||||| |||||||
T
196
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag
259
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 5640 - 5703
Alignment:
Q
133
ttcaccaagtctctcaaaaaatgaaacttcacatctatgtgtttacttttgccatggaacacag
196
Q
||||||||||| || | ||| ||||| ||||||||||| ||||||||||| ||||| |||||||
T
5640
ttcaccaagtccctaagaaagtgaaatttcacatctatatgtttactttttccatgaaacacag
5703
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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