View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_high_114 (Length: 268)
Name: NF0214_high_114
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_114 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 49536589 - 49536798
Alignment:
| Q |
36 |
gatttaagctgcaaatcaagggatttcttcacccatttaggatgatatgtcacctgataccaggccgaagctttttgttcatacaacaaannnnnnnctt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49536589 |
gatttaagctgcaaatcaagggatttcttcacccatttaggatgatatgtcacctgataccaggccgaagctttttgttcatacaacaaatttttttctt |
49536688 |
T |
|
| Q |
136 |
tatcgcttaattctccaacatctgacttcagtttctcaaaaatttgcctaaattcttttttcagtgcactgtacgagtgcttcagcctctccttaagttc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49536689 |
tatcgcttaattctccaacatctgacttcagtttctcaaaaatttgcctaaattcttttttcagtgcactgtacgagtgcttcagcctctccttaagttc |
49536788 |
T |
|
| Q |
236 |
cctttgcttc |
245 |
Q |
| |
|
|| ||||||| |
|
|
| T |
49536789 |
cccttgcttc |
49536798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1488 times since January 2019
Visitors: 2391