View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_116 (Length: 267)
Name: NF0214_high_116
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_116 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 40763648 - 40763871
Alignment:
| Q |
15 |
gggtggtgtgaatgcagatatctgctgttgctcggattgggaatgctcttgcttatgctacacatacatttttcaacaagcatgggtttctttatgtgcg |
114 |
Q |
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| T |
40763648 |
gggtggtgtgaatgcagatatctgctgttgctcggattgggaatgctcttgcttatgctacacatacatttttcaacaagcatgggtttctttatgtgcg |
40763747 |
T |
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| Q |
115 |
cacgccaattgtcacgacaagtgattgtgagggtgctggtgaaatgtttcaagtgacaactctgttcagtgaagcagagaggttggagaaggaactgata |
214 |
Q |
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| T |
40763748 |
cacgccaattgtcacgacaagtgattgtgagggtgctggtgaaatgtttcaagtgacaactctgttcagtgaagcagagaggttggagaaggaactgata |
40763847 |
T |
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| Q |
215 |
cagaatcctcctcctactgaatct |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
40763848 |
cagaatcctcctcctactgaatct |
40763871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 40763938 - 40763991
Alignment:
| Q |
185 |
gaagcagagaggttggagaaggaactgatacagaatcctcctcctactgaatct |
238 |
Q |
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| T |
40763938 |
gaagcagaaaggttggagaaggaacagatacagaatcctcctcctactgaatct |
40763991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 42911384 - 42911596
Alignment:
| Q |
23 |
tgaatgcagatatctgctgttgctcggattgggaatgctcttgcttatgctacacatacatttttcaacaagcatgggtttctttatgtgcgcacgccaa |
122 |
Q |
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| T |
42911384 |
tgaatgcagatatctgctgttgctcggattcggaatgctcttgcttatgctacacatacatttttcaacaagcatgggtttctttatgtgcacacgccaa |
42911483 |
T |
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| Q |
123 |
ttgtcacgacaagtgattgtgagggtgctggtgaaatgtttcaagtgacaactctgttcagtgaagcagagaggttggagaaggaactgatacagaatcc |
222 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911484 |
ttgtcacgactagtgattgtgagggtgctggtgaaatgtttcaagtgacaactttgttcagtgaagcagagaggttggagaaggaactgatacagaatcc |
42911583 |
T |
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| Q |
223 |
tcctcctactgaa |
235 |
Q |
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|||||| |||||| |
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| T |
42911584 |
tcctccaactgaa |
42911596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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