View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_121 (Length: 266)

Name: NF0214_high_121
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_121
NF0214_high_121
[»] chr8 (4 HSPs)
chr8 (45-237)||(44306728-44306920)
chr8 (60-237)||(43896289-43896466)
chr8 (60-237)||(44312522-44312699)
chr8 (61-237)||(44301636-44301814)
[»] chr4 (1 HSPs)
chr4 (60-237)||(18701897-18702074)
[»] chr3 (1 HSPs)
chr3 (60-237)||(4084407-4084584)
[»] chr6 (1 HSPs)
chr6 (60-237)||(8158890-8159067)
[»] chr5 (2 HSPs)
chr5 (67-145)||(35856724-35856802)
chr5 (170-232)||(35856641-35856703)
[»] chr2 (1 HSPs)
chr2 (77-133)||(10541388-10541444)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 44306728 - 44306920
Alignment:
Q  45 tcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306728 tcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa 44306827  T
Q  145 taagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306828 taagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 44306920  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 43896289 - 43896466
Alignment:
Q  60 gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  ||    |  |    
T  43896289 gaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttactaatccatcattcct 43896388  T
Q  160 aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    ||    |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||    
T  43896389 aatcacatttgtgaaaacctttgcaacaaatggcgcatcaatgcttccagacaattcaactttctcaccattcctatt 43896466  T

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Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 44312522 - 44312699
Alignment:
Q  60 gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt 159  Q
    |||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||  |  |    
T  44312522 gaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaataagtacctaatcct 44312621  T
Q  160 aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    |    ||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  44312622 atacatatttgtgaaaacctttgctacaaatggctcatcaacacttccagacaattcaactttctcaccattcttatt 44312699  T

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Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 44301636 - 44301814
Alignment:
Q  61 aatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataag------tcactc 154  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||      ||||||    
T  44301636 aatctgaatcttctcaccagtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagacaagttaa-aagaatccatcactc 44301734  T
Q  155 ctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    |  |  |    |||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  44301735 caataca---aatttgtgaaaacctttgctacaaatggcgcatcaacacttccagacaattcaactttctcaccattcttatt 44301814  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 18701897 - 18702074
Alignment:
Q  60 gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt 159  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |  |  ||| |     
T  18701897 gaatctgaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctc 18701996  T
Q  160 aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    | |   |||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  18701997 atgccaatttgcaaaagcctttgcaacaaatggtgcatcaatacttccagacaattcaactttctcaccattcttatt 18702074  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 4084407 - 4084584
Alignment:
Q  60 gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaataagtcactcctgtt 159  Q
    |||||| |||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||     |  |    |    
T  4084407 gaatcttaatcttcttaccggtgttaacatttgtaataaaatcacccttcttgataacaccctgatagattcttagataagttaattttaaaaacggcct 4084506  T
Q  160 aagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
    | |   || ||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||    
T  4084507 atgccaatatgtgaaagcctttccaacaaatggtgcatcaatacttccaaacaattcaactttctcaccattcctatt 4084584  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 8159067 - 8158890
Alignment:
Q  60 gaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaa---taagtcactcct 156  Q
    |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||   ||| |   ||||    
T  8159067 gaatctcaatcttcttaccagtgttaacatttgtaataaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcct 8158968  T
Q  157 gttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatt 237  Q
      ||  |  | ||  ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||    
T  8158967 -atacca--agttacgaaagcctttgcaacaaatggagcatcaatacttccagacaattcaactttctcgccattcctatt 8158890  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 35856802 - 35856724
Alignment:
Q  67 aatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat 145  Q
    |||||||||||||||||||||||| |||||||||||  | ||  ||||||| |||||||||||||||||||| ||||||    
T  35856802 aatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat 35856724  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 35856703 - 35856641
Alignment:
Q  170 gtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattc 232  Q
    |||||||||  ||| ||||| ||| |||||||||||||||||||||| | |||||| ||||||    
T  35856703 gtgaaagccaatgcgacaaacggcccatcaatacttccagacaattctactttctctccattc 35856641  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q  77 ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattctt 133  Q
    ||||||||| ||||||||||||||||  |||||  ||| ||||||| ||||||||||    
T  10541388 ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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