View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_130 (Length: 261)
Name: NF0214_high_130
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_130 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 53700473 - 53700666
Alignment:
| Q |
40 |
ataacaacagtttttcctatcctttctttgtgtacagcccaagcccatacaatggcagctctccacatctaaactcaatttccttaaatatctattatat |
139 |
Q |
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| T |
53700473 |
ataacaacagtttttcctatcctttctttgtgtacagccca------tacaatggcagctctccacatctaaactcaatttccttaaatatctat---at |
53700563 |
T |
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| Q |
140 |
cttgtactagattataattttttccacaaatatttccaaaattaaccctcatgttacttaaaattcccactgataaataaatcttatctggttcttgtct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53700564 |
cttgtactagattataattttttccacaaatatttccaaaattaaccctcatgttacttaaaattcccactgataaataaatcttatctggttcttgtgt |
53700663 |
T |
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