View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_133 (Length: 260)
Name: NF0214_high_133
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_133 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4384414 - 4384184
Alignment:
| Q |
1 |
tcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgct |
100 |
Q |
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| T |
4384414 |
tcagttttattaaaaacacttaattccaagtgtaataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgct |
4384315 |
T |
|
| Q |
101 |
tatgagagcatgcatattggaattcaatccagtctcaatttctattggttttctgttgtctatcataccatggcttctaagcctttaaacagaaatgttt |
200 |
Q |
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| T |
4384314 |
tatgagagcatgcatattggaattcaatccaggctcaatttctattggttttctgttgtctatcataccatggcttctaagcctttagacggaaatgttt |
4384215 |
T |
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| Q |
201 |
cagtcctggaagtctgtccaaatatattaac |
231 |
Q |
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| T |
4384214 |
cagtcctggaagtctgtccaaatatattaac |
4384184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 35546487 - 35546582
Alignment:
| Q |
33 |
taataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaat |
128 |
Q |
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| T |
35546487 |
taataggagagtacatgtcctgatcatttgccgcactagttgttgtaaataggagtatgaaccttgcttatgagagcataaatattggaattcaat |
35546582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 46520378 - 46520309
Alignment:
| Q |
78 |
tcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccagtctcaatttctattg |
147 |
Q |
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||||||||||||| ||||||||||||||||||| | ||||| |||||| | ||| | |||||||| |||| |
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| T |
46520378 |
tcaataggaatagcaaccttgcttatgagagcaggtatattcgaattcgacccaatgtcaatttccattg |
46520309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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