View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_139 (Length: 258)

Name: NF0214_high_139
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_139
NF0214_high_139
[»] chr2 (1 HSPs)
chr2 (29-258)||(36969788-36970017)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 36969788 - 36970017
Alignment:
Q  29 aaacagagggaacagttctcgacacagattttaaatctctgcaatgactttaaagtttaaacagtgggacacaacaacacagggccagatgaaggttgga 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36969788 aaacagagggaacagttctcgacacagattttaaatctctgcaatgactttaaagtttaaacagtgggacacaacaacacagggccagatgaagtttgga 36969887  T
Q  129 gaacagccatgagttgttctcttacaatttagaaaaaatggggtcaatttgttttcaagcagatacataattagcgttaaacaaaacatgctttaattaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36969888 gaacagccatgagttgttctcttacaatttagaaaaaatggggtcaatttgttttcaagcagatacataattagcgttaaacaaaacatgctttaattaa 36969987  T
Q  229 gtagagaactagttacaacatcacagaaca 258  Q
    ||||||||||||||||||||||||||||||    
T  36969988 gtagagaactagttacaacatcacagaaca 36970017  T

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