View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_143 (Length: 257)

Name: NF0214_high_143
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_143
NF0214_high_143
[»] scaffold0001 (1 HSPs)
scaffold0001 (36-237)||(67834-68036)
[»] chr8 (2 HSPs)
chr8 (36-237)||(33468437-33468637)
chr8 (74-202)||(4780684-4780812)
[»] chr4 (3 HSPs)
chr4 (52-237)||(4049563-4049749)
chr4 (36-237)||(41973010-41973213)
chr4 (36-205)||(15993292-15993461)
[»] chr2 (5 HSPs)
chr2 (74-234)||(14816115-14816276)
chr2 (36-237)||(14462064-14462266)
chr2 (69-237)||(4259435-4259604)
chr2 (44-157)||(14128179-14128292)
chr2 (138-200)||(15089451-15089513)
[»] chr7 (2 HSPs)
chr7 (36-220)||(36713979-36714163)
chr7 (36-230)||(6650959-6651155)
[»] chr3 (5 HSPs)
chr3 (73-205)||(29540865-29540997)
chr3 (36-188)||(27856684-27856836)
chr3 (60-157)||(28728050-28728147)
chr3 (107-202)||(8966841-8966936)
chr3 (44-157)||(35544403-35544515)
[»] chr5 (4 HSPs)
chr5 (44-157)||(34152246-34152359)
chr5 (101-205)||(41695754-41695858)
chr5 (44-237)||(14050616-14050808)
chr5 (58-163)||(15567557-15567661)
[»] chr1 (3 HSPs)
chr1 (44-157)||(18285518-18285631)
chr1 (60-146)||(25447707-25447793)
chr1 (44-157)||(1190755-1190868)
[»] chr6 (3 HSPs)
chr6 (80-157)||(31826996-31827073)
chr6 (44-157)||(18506541-18506654)
chr6 (147-205)||(10230973-10231031)


Alignment Details
Target: scaffold0001 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 68036 - 67834
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 135  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  68036 gttttgtagcttaagaaaattccacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 67937  T
Q  136 ttttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgt-ttttagttgtggtttctacattcaactttggct 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  67936 ttttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgttttttacttgtggtttctacattcaactttggct 67837  T
Q  235 ttt 237  Q
    |||    
T  67836 ttt 67834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 33468637 - 33468437
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataatttt-acttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaac 134  Q
    ||||||| ||||||||||||| |||||| || ||||| |||| | ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  33468637 gttttgtggcttaagaaaattccacttacgagcaatattttttatttggcgtttgttcttgaatagattagtaacaaaaatgaatctgtttaggagaaac 33468538  T
Q  135 attttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg-tttttagttgtggtttctacattcaactttggc 233  Q
    | ||||||||| |||||||||||||||||||   ||||||||| ||| |||||||||||||||||| |||||| ||||| ||| |||| |||||||||||    
T  33468537 aatttggattacaatgattctttgtgcacgg---cttgtggcacggtggaggatcaagaccatttgttttttacttgtgctttttacaatcaactttggc 33468441  T
Q  234 tttt 237  Q
    ||||    
T  33468440 tttt 33468437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 4780812 - 4780684
Alignment:
Q  74 ttttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggctacttgt 173  Q
    ||||| |||| |||||||| ||| ||||| | |||| || |||||||| |||| ||||||  | |||||||||||||||||||| ||  || |  ||||     
T  4780812 ttttatttggtgtttgttcctgaatagatcaacaactaagatgaatctgtttaagagaaatgtcttggattataatgattctttttgttcgaccgcttgc 4780713  T
Q  174 ggcatggtagaggatcaagaccatttgtt 202  Q
    ||  |||| ||||||||||| ||||||||    
T  4780712 ggattggttgaggatcaagatcatttgtt 4780684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 4049563 - 4049749
Alignment:
Q  52 aaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatga 151  Q
    ||||| |||||| |||||||| ||||| |  |||||| ||| ||| | |||||||||||||||||||| | ||||| ||||||||||| ||||| |||||    
T  4049563 aaattccacttaggatcaatatttttattaagcgtttattcctgaatcgattagcaacaaaaatgaatatgtttagaagaaacattttcgattacaatga 4049662  T
Q  152 ttctttgtgcacggctacttgtggcatggtagaggatcaagaccattt-gtttttagttgtggtttctacattcaactttggctttt 237  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||  |||||| ||||| |||||||| |||||||||||||||    
T  4049663 ttctttgtgcacgactacttgtggcatggtggaggatcaagaccatttattttttatttgtgctttctacaatcaactttggctttt 4049749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 41973010 - 41973213
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggc---gtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaa 132  Q
    |||||||  |||||||||||| |||||||| |||||| ||||| ||| |    ||||||||||| |||  ||||||||||||||||||  ||||| ||||    
T  41973010 gttttgtgccttaagaaaattccacttaaggtcaatatttttatttgacattatttgttcttgaatag--tagcaacaaaaatgaatcagtttagtagaa 41973107  T
Q  133 acattttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg-tttttagttgtggtttctacattcaactttg 231  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||| |||||| |||||| ||||| ||| |||| |||||||||    
T  41973108 acattttggattataatgatactttgtgcacgactacttgtggcatggtggatgatcaagatcatttgttttttacttgtgctttttacagtcaactttg 41973207  T
Q  232 gctttt 237  Q
    ||||||    
T  41973208 gctttt 41973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 15993292 - 15993461
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 135  Q
    ||||||| ||||||| ||||| ||||||||  ||||| ||||| |||| |||||||| ||| |||||||| |  |||||  ||| | |||||||||||||    
T  15993292 gttttgtggcttaagcaaattccacttaaggccaatatttttatttggtgtttgttcctgaatagattagtagtaaaaaataatttgtttaggagaaaca 15993391  T
Q  136 ttttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgttttt 205  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  15993392 ttttggattacaatgattctttgtgtacgactacttgtggcatggtagaggatcaaaaccatttgttttt 15993461  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 14816115 - 14816276
Alignment:
Q  74 ttttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggctacttgt 173  Q
    ||||| ||||| ||||||  ||| |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||  ||||||    
T  14816115 ttttatttggcatttgtttctgaatagattagtaacaaaaatgaatctgtttaggagaaacattttggattacaatgattctttgtgcacggaaacttgt 14816214  T
Q  174 ggcatggtagaggatcaagaccatttg-tttttagttgtggtttctacattcaactttggct 234  Q
    |||||||| |||||| ||||||||||| |||||| ||||| |||||||  ||||||||||||    
T  14816215 ggcatggtggaggattaagaccatttgttttttacttgtgttttctacggtcaactttggct 14816276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 14462064 - 14462266
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 135  Q
    ||||||| ||||||| |||||||||||||| |||||| ||||| |||| ||| |||| ||| ||||||| | |||||||| ||| | |||||||||||||    
T  14462064 gttttgtggcttaagcaaatttcacttaaggtcaatatttttatttggtgttcgttcctgaatagattaacgacaaaaattaatttgtttaggagaaaca 14462163  T
Q  136 ttttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg-tttttagttgtggtttctacattcaactttggct 234  Q
    | |||||||| ||| ||||||||||||||||||||||||||||||   ||||||| |||| |  | |||||| ||||| |||||||| |||||||||| |    
T  14462164 tattggattacaattattctttgtgcacggctacttgtggcatggcgtaggatcatgaccgtcagttttttacttgtgctttctacagtcaactttgggt 14462263  T
Q  235 ttt 237  Q
    |||    
T  14462264 ttt 14462266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 4259604 - 4259435
Alignment:
Q  69 aataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggcta 168  Q
    |||| ||||| ||||| ||||||| ||| |||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| ||  |||| |    
T  4259604 aatatttttatttggcatttgttcctgaatagattagcaacaaaaatgaatatgtttaggagaaatatcttggattataatgattctttttgttcggcca 4259505  T
Q  169 cttgtggcatggtagaggatcaagaccatttgtt-tttagttgtggtttctacattcaactttggctttt 237  Q
    |||| ||  |||||||||||||| |  ||||||| |||  ||||| ||| || | |||||||||||||||    
T  4259504 cttgcggattggtagaggatcaaaattatttgttcttttcttgtgttttttatagtcaactttggctttt 4259435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 14128292 - 14128179
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||| | |||| |||||||| ||||| |||| ||||||||  || || ||||||||| || |||||||| ||||||||||| || ||||||    
T  14128292 gcttaagcaaattccgcttacgatcaatatttttatttggtgtttgttccagaataaattagcaactaagatgaatctctttaggagaaatatcttggat 14128193  T
Q  144 tataatgattcttt 157  Q
    ||||||||||||||    
T  14128192 tataatgattcttt 14128179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 15089451 - 15089513
Alignment:
Q  138 ttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg 200  Q
    |||||||| ||||||||||| |||||| |||||| ||||||||| || |||||| ||||||||    
T  15089451 ttggattacaatgattctttatgcacgactacttatggcatggtggatgatcaataccatttg 15089513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 36714163 - 36713979
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 135  Q
    ||||||| ||||||| |||||  ||||||  |||||| |||||  || ||||||||| | | |||||||||||||||| |||||   ||||||||||| |    
T  36714163 gttttgtggcttaagcaaattcgacttaatgtcaatatttttatctgacgtttgttcctaaatagattagcaacaaaa-tgaataagtttaggagaaata 36714065  T
Q  136 ttttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgtttt-tagttgtggtttctac 220  Q
    |||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||| ||||| |||| || ||||| |||||||    
T  36714064 ttttggattacaatgattctttgtgcacgactacttgtggcattgtggaggatcaagatcatttattttatacttgtgctttctac 36713979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 6651155 - 6650959
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaaca 135  Q
    |||||||  |||||| ||||| | |||||| | |||| ||||| ||||| ||||||  ||| || ||||| ||| ||||||||| | ||||||||| ||     
T  6651155 gttttgtgccttaagcaaattcctcttaaggtgaatatttttatttggcttttgtttctgaataaattagtaactaaaatgaatttgtttaggagatact 6651056  T
Q  136 ttttggattataatgattc-tttgtgcacggctacttgtggcatggtagaggatcaagaccatttgt-ttttagttgtggtttctacattcaacttt 230  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||  ||| ||||||||| ||||||||| ||||| ||||| ||| |||||||||||||    
T  6651055 ttttggattacaatgattcttttatgcacgggtacttgtggctgggtggaggatcaataccatttgtattttacttgtgatttttacattcaacttt 6650959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 29540997 - 29540865
Alignment:
Q  73 attttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggctacttg 172  Q
    |||||| |||| |||||||| | | || |||||||||||||||| || | |||| |||||||||||| ||||| ||| ||||||||||||||||||||||    
T  29540997 attttatttggtgtttgttcctaaataaattagcaacaaaaatggatatgtttaagagaaacattttagattacaataattctttgtgcacggctacttg 29540898  T
Q  173 tggcatggtagaggatcaagaccatttgttttt 205  Q
    ||||||||| ||||||||| |||| ||||||||    
T  29540897 tggcatggtggaggatcaaaaccaattgttttt 29540865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 27856836 - 27856684
Alignment:
Q  36 gttttgtagcttaagaaaatttcacttaagatcaataatttt-acttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaac 134  Q
    ||||||||||||||| ||||| |||||||| | |||| |||| | |||| |||||||| | | ||||||| |||||||||||||||| |||| || |||     
T  27856836 gttttgtagcttaagcaaattccacttaaggttaatattttttatttggtgtttgttcctaa-tagattaacaacaaaaatgaatctttttaagaaaaat 27856738  T
Q  135 attttggattataatgattctttgtgcacggctacttgtggcatggtagaggat 188  Q
    |||| |||||| |||||||| |||||||||||||||||||| || || ||||||    
T  27856737 atttcggattacaatgattcattgtgcacggctacttgtggtattgtggaggat 27856684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 28728050 - 28728147
Alignment:
Q  60 cttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattcttt 157  Q
    |||||| |||||| ||||| |||||||||||| |||| |||||||||||| || || ||||| ||| ||||||| || ||| ||||||| ||||||||    
T  28728050 cttaaggtcaatatttttatttggcgtttgtttttgaatagattagcaactaagataaatctgttttggagaaatatcttgaattataacgattcttt 28728147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 8966936 - 8966841
Alignment:
Q  107 aacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgtt 202  Q
    |||||| |||||| | |||||||||||||||||| ||||||||||| |||| ||  | ||| |||||||  || ||||||||| | | ||||||||    
T  8966936 aacaaagatgaatttgtttaggagaaacattttgaattataatgatactttttgttccgctgcttgtggattgatagaggatcgaaatcatttgtt 8966841  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 35544403 - 35544515
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||| | |||||| | |||| ||||  ||| ||||||||| ||| |||||||||||| | || || ||  ||||||||||| || ||||||    
T  35544403 gcttaagcaaattccgcttaaggtaaatatttttttttgacgtttgttcctgaatagattagcaactacaaaga-tcggtttaggagaaatatcttggat 35544501  T
Q  144 tataatgattcttt 157  Q
    |||||| |||||||    
T  35544502 tataattattcttt 35544515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 34152359 - 34152246
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||||||||| | |||||| |||||| ||||| |||| |||||||| ||| ||||||||||||||| |||||||| ||||||||||| || ||||||    
T  34152359 gcttaagaaaattccgcttaaggtcaatatttttatttggtgtttgttcctgaatagattagcaacaaagatgaatctgtttaggagaaatatcttggat 34152260  T
Q  144 tataatgattcttt 157  Q
    ||||||||||||||    
T  34152259 tataatgattcttt 34152246  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 41695754 - 41695858
Alignment:
Q  101 attagcaacaaaaatgaatctatttaggagaaacattttggattataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttg 200  Q
    ||||||||||||||||||||| |||||||||||||||||  |||| |||| ||| ||||||| ||||| |||||||||||| ||||||||| ||||||||    
T  41695754 attagcaacaaaaatgaatctgtttaggagaaacattttttattacaatgtttcattgtgcaaggctatttgtggcatggtggaggatcaaaaccatttg 41695853  T
Q  201 ttttt 205  Q
    |||||    
T  41695854 ttttt 41695858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 14050616 - 14050808
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||| |||||||| |||||| ||||  ||||||||||||| |||  |||||||||| || ||| ||| | ||||| ||||||| ||| |||    
T  14050616 gcttaagcaaattccacttaaggtcaatatttttgtttggcgtttgttcatgaagagattagcaaaaataat-aatttgtttagaagaaaca-tttagat 14050713  T
Q  144 tataatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgtttt-tagttgtggtttctacattcaactttggctttt 237  Q
    || |||||||||| ||||||| ||  || || |||  | |||||||||||||||||||||| || ||||| ||| |||| | || ||||||||||    
T  14050714 tacaatgattcttagtgcacgactcattatgacatcatggaggatcaagaccatttgttttatacttgtgctttttacagttaaatttggctttt 14050808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 15567557 - 15567661
Alignment:
Q  58 cacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattcttt 157  Q
    |||| |||||||||| ||||| |||| |||| ||| ||| || ||||||||| ||||||||  | ||||||| ||||||||| ||||| |||||||||||    
T  15567557 cactgaagatcaata-ttttatttggtgtttattcctgaataaattagcaactaaaatgaacttgtttaggacaaacattttagattacaatgattcttt 15567655  T
Q  158 gtgcac 163  Q
    ||||||    
T  15567656 gtgcac 15567661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 18285518 - 18285631
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||| | |||||| | |||||||||| ||| ||||||||  ||| ||||||||||||||| |||||| | ||||||||||| || ||||||    
T  18285518 gcttaagcaaattccgcttaaggttaataattttatttgtcgtttgtttctgaatagattagcaacaaagatgaatatgtttaggagaaatatattggat 18285617  T
Q  144 tataatgattcttt 157  Q
    ||||||||||||||    
T  18285618 tataatgattcttt 18285631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 25447793 - 25447707
Alignment:
Q  60 cttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattat 146  Q
    ||||||||||||| |||||| |||| |||||||||||  |||||||||||||| |||||| | ||||||||||| ||||| ||||||    
T  25447793 cttaagatcaatatttttacctggcatttgttcttgaacagattagcaacaaagatgaatttgtttaggagaaatattttagattat 25447707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 1190755 - 1190868
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||||| |||||| | |||| || || ||| ||||||||| | | ||||||| |||  ||||||||||||||||||||||| ||  || ||    
T  1190755 gcttaagcaaatttcgcttaaggttaatatttgtatttgacgtttgttcctaaatagattaacaattaaaatgaatctatttaggagaaatatcatgaat 1190854  T
Q  144 tataatgattcttt 157  Q
    ||||||||||||||    
T  1190855 tataatgattcttt 1190868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 31827073 - 31826996
Alignment:
Q  80 ttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggattataatgattcttt 157  Q
    ||||| |||||||  || |||||||||||| || |||||| | ||||||||||| ||||||||||||||||| |||||    
T  31827073 ttggcatttgttccagaatagattagcaactaagatgaatatgtttaggagaaatattttggattataatgaatcttt 31826996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 18506654 - 18506541
Alignment:
Q  44 gcttaagaaaatttcacttaagatcaataattttacttggcgtttgttcttgagtagattagcaacaaaaatgaatctatttaggagaaacattttggat 143  Q
    ||||||| ||||||| |||||| | |||| ||||| ||||| |||||||   | ||||||||||||    || ||||||||||||||||| || || |||    
T  18506654 gcttaagcaaatttcgcttaaggttaatatttttatttggcatttgttccaaaatagattagcaactgcgattaatctatttaggagaaatatcttagat 18506555  T
Q  144 tataatgattcttt 157  Q
    |||||||| |||||    
T  18506554 tataatgactcttt 18506541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 10230973 - 10231031
Alignment:
Q  147 aatgattctttgtgcacggctacttgtggcatggtagaggatcaagaccatttgttttt 205  Q
    |||||||| ||||||| ||||   |||||||| || |||||||||||||||||||||||    
T  10230973 aatgattcgttgtgcatggctcactgtggcatcgtggaggatcaagaccatttgttttt 10231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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