View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_164 (Length: 248)
Name: NF0214_high_164
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_164 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 16393062 - 16392860
Alignment:
| Q |
28 |
attttcattgcaaaaacgaccaataatagtttcatattgtaacattctcattgcaaaaacgaccatatcccataatcactgaattaacatacagatatac |
127 |
Q |
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| T |
16393062 |
attttcattgcaaaaacgaccaataatagtttcatattgtaacattctcattgcaaaaacgaccatatcccataatcactgaattaacatatagatatac |
16392963 |
T |
|
| Q |
128 |
attcattnnnnnnnnnnntatagatatatatttttgtttaataaaccatatatttttattcaaattaagcttctacaagaacaaaaatgaatttaagcac |
227 |
Q |
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| T |
16392962 |
atttatt-aaaaaaaacatatagatatatatttttgtttaataaaccatatatttttattcaaattaagcttctacaagaacaaaaatgaatttaagcac |
16392864 |
T |
|
| Q |
228 |
tttc |
231 |
Q |
| |
|
|||| |
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|
| T |
16392863 |
tttc |
16392860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 16399282 - 16399207
Alignment:
| Q |
49 |
aataatagtttcatattgtaacattctcattgcaaaaacgaccatatcccataatcactgaattaacatacagata |
124 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||| |||| ||||| |
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| T |
16399282 |
aataatagtttcatattgtaacattgtcattgcaaaaacgatcattacccataatcactaaattatcatatagata |
16399207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 16393084 - 16393041
Alignment:
| Q |
49 |
aataatagtttcatattgtaacattctcattgcaaaaacgacca |
92 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16393084 |
aataatagtttcatattgtaacattttcattgcaaaaacgacca |
16393041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 48672234 - 48672201
Alignment:
| Q |
198 |
ttctacaagaacaaaaatgaatttaagcactttc |
231 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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| T |
48672234 |
ttctactagaacaaaaatgaatttaagcactttc |
48672201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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