View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_171 (Length: 237)
Name: NF0214_high_171
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_171 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 25508334 - 25508539
Alignment:
| Q |
29 |
acatgtaaaggatacaagacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacat |
128 |
Q |
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| T |
25508334 |
acatgtaaaggatacaagacataatttaggaggacaattctaccaccaattaataagtgtctattattccatt---tagacaaccgattcatcactacat |
25508430 |
T |
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| Q |
129 |
cgataactggtttccacaacccatctcaacgatgataacctctaatggacaagcccaaatatttaaagggttgggcatcaactttacaatataaatctcc |
228 |
Q |
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| T |
25508431 |
cgatagctggtttccacaacccatctcaacgatgataacctctaatggaaaagcccaaatacttaaagggtagagcatcaactttacaatataaaactcc |
25508530 |
T |
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| Q |
229 |
atcctcttc |
237 |
Q |
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| T |
25508531 |
agcctcttc |
25508539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 10497640 - 10497768
Alignment:
| Q |
33 |
gtaaaggatacaagacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgat |
132 |
Q |
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|||||| ||||||||||||||| | |||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| | |
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| T |
10497640 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccac |
10497736 |
T |
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| Q |
133 |
aactggtttccacaacccatctcaacgatgat |
164 |
Q |
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| T |
10497737 |
aaccggtttccacaatccccctctacgatgat |
10497768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 10502669 - 10502797
Alignment:
| Q |
33 |
gtaaaggatacaagacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgat |
132 |
Q |
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| T |
10502669 |
gtaaagcatacaagacagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccac |
10502765 |
T |
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| Q |
133 |
aactggtttccacaacccatctcaacgatgat |
164 |
Q |
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| T |
10502766 |
aaccggtttccacaatccccctctacgatgat |
10502797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 13335942 - 13336066
Alignment:
| Q |
33 |
gtaaaggatacaagacagaatttaggaggacaattctaccaccaatgaataagtgtctattattccattatttggacaatcgattcatcactacatcgat |
132 |
Q |
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|||||| |||||| |||||||| | |||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| ||||| |||| | |
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| T |
13335942 |
gtaaagcatacaaaacagaattcaagaggacaattataccaccaatagataagcgtctattattcc---atttggacagacgattcctcactgcatccac |
13336038 |
T |
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| Q |
133 |
aactggtttccacaacccatctcaacga |
160 |
Q |
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| T |
13336039 |
aaccggtttccacaatccctctctacga |
13336066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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