View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_179 (Length: 206)
Name: NF0214_high_179
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_179 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 28380043 - 28379954
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcatctcactc |
93 |
Q |
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| T |
28380043 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactc |
28379954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 28414981 - 28415061
Alignment:
| Q |
4 |
gtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttc |
84 |
Q |
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| T |
28414981 |
gtattctgagaacaagcacatagcaagaaacagaacttcacaatcattccaaaccaccaaaagaagataacattattgttc |
28415061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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