View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0214_high_18 (Length: 508)

Name: NF0214_high_18
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0214_high_18
NF0214_high_18
[»] chr7 (1 HSPs)
chr7 (11-440)||(45675688-45676103)
[»] chr1 (5 HSPs)
chr1 (59-194)||(37963053-37963188)
chr1 (366-430)||(37962910-37962974)
chr1 (128-166)||(16138163-16138201)
chr1 (83-192)||(51044663-51044772)
chr1 (134-166)||(16127079-16127111)
[»] chr4 (2 HSPs)
chr4 (348-428)||(5690678-5690758)
chr4 (135-178)||(53557711-53557754)
[»] chr3 (3 HSPs)
chr3 (138-169)||(20740369-20740400)
chr3 (138-168)||(20732633-20732663)
chr3 (83-192)||(34626408-34626517)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 45675688 - 45676103
Alignment:
Q  11 cacagaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675688 cacagaggttttttgaatctgaatatttggtgtgtcattgtcattgttctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttc 45675787  T
Q  111 ttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaa 210  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675788 tttttcagacttgaattccatagattttttatctcattgtctgttcttccaggtaactgagctgcaatctgcgaccacctgataattcaaaaggcaccaa 45675887  T
Q  211 agtatattagtcattgtcgcttcgattcgtagaaagnnnnnnnnnnnnnngcatgtaacaaaataatcttgatgacttaattaaaagccaaatctaaatg 310  Q
    ||||||||||||||||||||||||||||||||||||                |  ||  |||||||||||||||||||||||||||||||||||||||||    
T  45675888 agtatattagtcattgtcgcttcgattcgtagaaagaaaa------------aaata--aaaataatcttgatgacttaattaaaagccaaatctaaatg 45675973  T
Q  311 caacacttatcagttccttaattattacaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgct 410  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45675974 caacacttatcaattccttaattattacaattattggtacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgct 45676073  T
Q  411 cctctcttcaaatcaggccttagataattt 440  Q
    ||||||||||||||||||||||||||||||    
T  45676074 cctctcttcaaatcaggccttagataattt 45676103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 37963188 - 37963053
Alignment:
Q  59 ctcagagaatggttggtgtgtgtttggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttctt 158  Q
    |||||||| ||||| |||||||||||||||||| ||  ||||  | | | ||||||| |||| |||||||||||||||||| || |||||||| ||||||    
T  37963188 ctcagagagtggtttgtgtgtgtttggatcaatgccactttgtctcaacctcttcttgagacatgaattccatagatttttaatctcattgtcagttctt 37963089  T
Q  159 ccaggtaactgagctgcaatctgcgaccacctgata 194  Q
    || ||||| || ||||||||||| ||||| ||||||    
T  37963088 cctggtaattgtgctgcaatctgagaccatctgata 37963053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 430
Target Start/End: Complemental strand, 37962974 - 37962910
Alignment:
Q  366 gcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggcct 430  Q
    |||||||||||||| ||  ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  37962974 gcatgaagttcaatgatcaaattctcttcttgttgtgagaatgctcctcttttcaaatcaggcct 37962910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 16138163 - 16138201
Alignment:
Q  128 ccatagattttttatttcattgtctgttcttccaggtaa 166  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16138163 ccatacattttttatttcattgtctgttcttccaggtaa 16138201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 51044772 - 51044663
Alignment:
Q  83 tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc 182  Q
    ||||||||| |||| || | |||| |||||||||| |||||||||||| |  |||||||| ||||| |||||||| || ||||| || | |||||| ||     
T  51044772 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga 51044673  T
Q  183 gaccacctga 192  Q
    | ||||||||    
T  51044672 gcccacctga 51044663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 16127079 - 16127111
Alignment:
Q  134 attttttatttcattgtctgttcttccaggtaa 166  Q
    |||||||||||||||||||||||||||||||||    
T  16127079 attttttatttcattgtctgttcttccaggtaa 16127111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 5690758 - 5690678
Alignment:
Q  348 tacctgttgcctaggagtgcatgaagttcaattatggaattctcttcttgctctgagaatgctcctctcttcaaatcaggc 428  Q
    ||||||||||| || | ||||||||||||||| ||  ||||||||||||  | ||||||||||||||| ||||||||||||    
T  5690758 tacctgttgccaagtactgcatgaagttcaatgatcaaattctcttcttattgtgagaatgctcctcttttcaaatcaggc 5690678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 53557754 - 53557711
Alignment:
Q  135 ttttttatttcattgtctgttcttccaggtaactgagctgcaat 178  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  53557754 ttttttatgtcattgtctgttcttccaggtaactgagcagcaat 53557711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 169
Target Start/End: Original strand, 20740369 - 20740400
Alignment:
Q  138 tttatttcattgtctgttcttccaggtaactg 169  Q
    ||||||||||||||||||||||||||||||||    
T  20740369 tttatttcattgtctgttcttccaggtaactg 20740400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 20732633 - 20732663
Alignment:
Q  138 tttatttcattgtctgttcttccaggtaact 168  Q
    |||||||||||||||||||||||||||||||    
T  20732633 tttatttcattgtctgttcttccaggtaact 20732663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 34626408 - 34626517
Alignment:
Q  83 tggatcaattcctttttgctttagcttcttcttcagacttgaattccatagattttttatttcattgtctgttcttccaggtaactgagctgcaatctgc 182  Q
    ||||||||| |||| || | |||| |||||||||| |||||||||||| |  ||||| || ||||| || ||||| || ||||| || |||||||| ||     
T  34626408 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttga 34626507  T
Q  183 gaccacctga 192  Q
    | ||||||||    
T  34626508 gcccacctga 34626517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2204 times since January 2019
Visitors: 2399