View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_high_19 (Length: 488)
Name: NF0214_high_19
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_high_19
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 29 - 458
Target Start/End: Original strand, 42117151 - 42117579
Alignment:
Q
29
aggttgatcaggccgtaaccccccgaaccaaagcgatcaagatttatgccccgataggttgggctcataacttccaatagggatattttcatgatttcta
128
Q
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
T
42117151
aggttgatcgggccgtaacccc-cgaaccaaagcgatcaagatttatgccccgataggttgggctcataactcccaatagggatattttcatgatttcta
42117249
T
Q
129
aaggcatgtgagcaattgaagagacctattgagaaatcttaatacacaaggggtaaaattatgtcatgtaatgttgggctcatagatagctaataggtac
228
Q
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
42117250
aaggcatgtgagcaattgaagggacctattgagaaatcttaatacacaaggggtaaagttatgtcatgtaatgttgggctcatagatagctaataggtac
42117349
T
Q
229
aagttatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagc
328
Q
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42117350
aagtaatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaaagc
42117449
T
Q
329
tgcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataa
428
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
42117450
tgcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctcttcttcactatataa
42117549
T
Q
429
gcctcttttacataacatgaacaaaacaaa
458
Q
||||||||||||||||||||||||||||||
T
42117550
gcctcttttacataacatgaacaaaacaaa
42117579
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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