View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0214_high_21 (Length: 487)
Name: NF0214_high_21
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 29 - 481
Target Start/End: Complemental strand, 11320691 - 11320239
Alignment:
| Q |
29 |
aaatataactgccaagtttcaaatgctgttttcaaatttctacctttgatttacttaagttattatttagacnnnnnnncaaactatatcaggcgtttgt |
128 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
11320691 |
aaatataactgccaagtttcaaatactgttttcaaatttctacctttgatttacttaagttattatttagactttttttcaaaccatatcaggcgtttgt |
11320592 |
T |
|
| Q |
129 |
ttctaaatttccacaatcttactaacctaacattactgatatgctttacattttcattttttgataggtaaatatgagcatagcaatacttccaatgtct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11320591 |
ttctaaatttccacaatcttactaacctaacattactgatatgctttacattttcattttttgataggtaaatatgagcatagcaatacttccaatgtct |
11320492 |
T |
|
| Q |
229 |
caacagttcaactggaacagtgcaacagttggcctcattcagtcctcttttttctggggttatctactcacacaggtataactgatatagtgatattcat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11320491 |
caacagttcaactggaacagtgcaacagttggcctcattcagtcctcttttttctggggttatctactcacacaggtataactgatatagtgatattcat |
11320392 |
T |
|
| Q |
329 |
gagattagttaacttaactagaaattggtttcatactttcatataaaaaatcttttagtattttaactcttttaagtaatactgctggttgaaactgcca |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11320391 |
gagattagttaacttaactagaaattggtttcatactttcatataaaaaatcttctagtattttaactcttttaagtaatactgctggttgaaactgcca |
11320292 |
T |
|
| Q |
429 |
taacatgtactaatctagcacgctctattgttcaaagtgccttttcatctcac |
481 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
11320291 |
taacatgtactaatctagcacgctctaatgttcaaagtgccttatcatttcac |
11320239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 29401049 - 29401162
Alignment:
| Q |
192 |
ataggtaaatatgagcatagcaatacttccaatgtctcaacagttcaactggaacagtgcaacagttggcctcattcagtcctcttttttctggggttat |
291 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
29401049 |
ataggtaaatatgagcatagcgatacttccaatgtcacaagagtttaactggaacagtgcaacagttggcttaattcagtcatcttttttctggggttat |
29401148 |
T |
|
| Q |
292 |
ctactcacacaggt |
305 |
Q |
| |
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||||| || ||||| |
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| T |
29401149 |
ctacttactcaggt |
29401162 |
T |
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Back To:
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