View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0214_high_3 (Length: 650)
Name: NF0214_high_3
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0214_high_3
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 90 - 608
Target Start/End: Complemental strand, 27985687 - 27985171
Alignment:
Q
90
taatggttctgagttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt
189
Q
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
27985687
taatggttgtgagttgcttgtgatggttcgttgctggcggtgagagataccatgttgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt
27985588
T
Q
190
tggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaataaaacttagcacaccacaccattaaacnnnnnnnnncgatggcatgaaaa
289
Q
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
T
27985587
tggagtggcaaaagaagcaatgtgacagaaacaaaccagttgcagacaataaaacttagcacaccacaccattaaacaaaaaaaaaagatggcatgaaaa
27985488
T
Q
290
tttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagcta
389
Q
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
T
27985487
tttggagtgcgttaatagcgtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagcta
27985390
T
Q
390
aattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacca
489
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
27985389
aattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacca
27985290
T
Q
490
aaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacacta
589
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
27985289
aaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacacta
27985190
T
Q
590
gctcttttatacgttgcac
608
Q
|||||||||||| ||||||
T
27985189
gctcttttatacattgcac
27985171
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 90 - 608
Target Start/End: Complemental strand, 28072218 - 28071701
Alignment:
Q
90
taatggttctgagttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt
189
Q
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
28072218
taatggttgtgagttgcttgtgatggttcgttgctggcggtgagagataccatgttgttgaagaacaaatatggcctaaaaaatgtgcccccaaatcatt
28072119
T
Q
190
tggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaataaaacttagcacaccacaccattaaacnnnnnnnnnc-gatggcatgaaa
288
Q
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
T
28072118
tggagtggcaaaagaagcaatgtgacagaaacaaaccagttgcagacaataaaacttagcacaccacaccattaaacaaaaaaaaaaagatggcatgaaa
28072019
T
Q
289
atttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagct
388
Q
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||
T
28072018
atttggagtgcgttaatagcgtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagct
28071921
T
Q
389
aaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacc
488
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28071920
aaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctacc
28071821
T
Q
489
aaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacact
588
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28071820
aaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaagcaccggccaagcgcagaaacacact
28071721
T
Q
589
agctcttttatacgttgcac
608
Q
||||||||||||| ||||||
T
28071720
agctcttttatacattgcac
28071701
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 463 - 605
Target Start/End: Original strand, 26415620 - 26415762
Alignment:
Q
463
acattctgaaactttacttttctaccaaaccttcttccagccgccagttctttcatatagtcctgtcctagaggggacttgtggagaaacagcatctgaa
562
Q
||||||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
T
26415620
acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttcttacatatagtcctgtcatagaggggacctgtggagaaacagcatctgaa
26415719
T
Q
563
gcaccggccaagcgcagaaacacactagctcttttatacgttg
605
Q
||||||| ||||||||||||||||||||||||||||||||||
T
26415720
gcaccggttaagcgcagaaacacactagctcttttatacgttg
26415762
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 26415265 - 26415333
Alignment:
Q
277
gatggcatgaaaatttggagtgcgttaatagcgtgagttgaactcaaatctgttaagtagcaacgtaaa
345
Q
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
T
26415265
gatggcatgaaaatttggagtgcattaatagagtgagttgaactcaaatctgttaagtagcaaggtaaa
26415333
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 26415044 - 26415220
Alignment:
Q
102
gttgcttctgagggttcgttgctggcggtgagagataccatgtcgttgaagaacaaatatggcctaaaaaa----------------tgtgcccccaaa-
184
Q
||||||||||| |||||||||||||| ||||||||| ||||| | |||||||||||||||||| | || || ||||||||||||
T
26415044
gttgcttctgatggttcgttgctggcagtgagagatgccatgccattgaagaacaaatatggcttcaacaacagaccggcacatgtatgtgcccccaaaa
26415143
T
Q
185
tcatttggaggggcaaatgaagcaatgtgacagaagcaaaccagttgcagacaata-aaacttagcacaccacacca
260
Q
|| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
T
26415144
tcctttggagtggcaaataaagcaatgtgacagaaacaaaccagttgcagacaatagaaacttagcccaccacacca
26415220
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 468
Target Start/End: Original strand, 26415454 - 26415569
Alignment:
Q
341
gtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgcc
440
Q
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||
T
26415454
gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaat---------aaagtaactgaaattt---ataactgct
26415541
T
Q
441
acttgtttatatactgaagccaacattc
468
Q
|||||||||||||||||||||| |||||
T
26415542
acttgtttatatactgaagccagcattc
26415569
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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