View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0214_high_36 (Length: 430)
Name: NF0214_high_36
Description: NF0214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0214_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 40567298 - 40566995
Alignment:
| Q |
30 |
gtttttaaataattttatcattaaaactcaattaaacgnnnnnnnnngttttgttgtgttaatcgtctgattat--gaggaaagagattctgaaaattat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40567298 |
gtttttaaataattttatcattaaaactcaattaaatttttttttttttttttttgtgttaatcgtctgattatacgaggaaagagattctgaaaattat |
40567199 |
T |
|
| Q |
128 |
ttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttcttatc-ttttctacaagctaagtgaaccctatttatnnnn |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
40567198 |
ttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttccttttctcatctttttctacaagctaagtgaacccta------aag |
40567105 |
T |
|
| Q |
227 |
nnntacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatataattttttctcatgggagacaattagagatgaga |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40567104 |
aaatacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggttcatagcatagaattttttctcatgggagacaattagagatgaga |
40567005 |
T |
|
| Q |
327 |
atcatacctt |
336 |
Q |
| |
|
|||||||||| |
|
|
| T |
40567004 |
atcatacctt |
40566995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 40567001 - 40566954
Alignment:
| Q |
374 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40567001 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
40566954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2025 times since January 2019
Visitors: 2396